PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013629779.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 594aa    MW: 65286.9 Da    PI: 6.3264
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013629779.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07234254526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f r G C++Gd C +aHg
  XP_013629779.1 234 PCPDFKR-GDCRRGDMCEYAHG 254
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.77E-159150IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.8E-1411150IPR020683Ankyrin repeat-containing domain
CDDcd002043.29E-1216130No hitNo description
SMARTSM002480.585987IPR002110Ankyrin repeat
PfamPF127962.8E-959124IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.81259150IPR020683Ankyrin repeat-containing domain
PRINTSPR014157.3E-56075IPR002110Ankyrin repeat
SMARTSM002480.003992124IPR002110Ankyrin repeat
PROSITE profilePS5008812.28992127IPR002110Ankyrin repeat
PRINTSPR014157.3E-5111125IPR002110Ankyrin repeat
SMARTSM003561.3E-5229255IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-5234254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4234256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.432234256IPR000571Zinc finger, CCCH-type
SMARTSM0035668264287IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.878264288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MMNHLRVETE DTFASLLELA ANNDVEGVRL SIDRDPSCVD EPGLWYGRQK GSKSIMVNDL  60
RTPLMVAATY GSVDVIKAIL PLTNVNRACG NDQTTALHCA ASGGAVNAVQ VVKLLLGAGA  120
DLNALDGDGQ RAGDVIVVPP KLEGVKLMLQ ELLLSSSASR SSPTELKKEY PVLDSSLPDI  180
KNCIYATDEF RMYSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY SCVPCPDFKR  240
GDCRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTGCARRV CFFAHTPDEL RPLYSSTGSA  300
VHSPRSGGDF AAGLSPMSPL SPSSSAMSWP HPNVPALHLP GSNLQSSRLR ASLNARDVHQ  360
DVLSDYEQEQ LLNEFSNSLS WSGRMKSLPH SNLDDLFSPE GGSSSSPRFT DSAVFSPTHK  420
SAVFNQFQQH QQQQQSMLSS PKSVDHSLFS GGGRMSPRNV VEPISPMSSR VSMLAQQQQH  480
RFRSLSSREL RTNTSPVVGS PVNNSSWWGS SNGEPDWGMS SEEALGKLRS SSSFDGDDDE  540
PDVSWVQSLV KESTPNEAKE NSKKPATVEV VTDNAGLEAW IEQMQLDQLI PQHN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013629779.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629778.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_013629779.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0D3B6A70.0A0A0D3B6A7_BRAOL; Uncharacterized protein
STRINGBo3g035820.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]