PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013629778.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 594aa MW: 65286.9 Da PI: 6.3264 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.6 | 1.9e-07 | 234 | 254 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f r G C++Gd C +aHg XP_013629778.1 234 PCPDFKR-GDCRRGDMCEYAHG 254 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 7.77E-15 | 9 | 150 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.8E-14 | 11 | 150 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.29E-12 | 16 | 130 | No hit | No description |
SMART | SM00248 | 0.58 | 59 | 87 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 2.8E-9 | 59 | 124 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.812 | 59 | 150 | IPR020683 | Ankyrin repeat-containing domain |
PRINTS | PR01415 | 7.3E-5 | 60 | 75 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0039 | 92 | 124 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.289 | 92 | 127 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 7.3E-5 | 111 | 125 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.3E-5 | 229 | 255 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.3E-5 | 234 | 254 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-4 | 234 | 256 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.432 | 234 | 256 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 68 | 264 | 287 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.878 | 264 | 288 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MMNHLRVETE DTFASLLELA ANNDVEGVRL SIDRDPSCVD EPGLWYGRQK GSKSIMVNDL 60 RTPLMVAATY GSVDVIKAIL PLTNVNRACG NDQTTALHCA ASGGAVNAVQ VVKLLLGAGA 120 DLNALDGDGQ RAGDVIVVPP KLEGVKLMLQ ELLLSSSASR SSPTELKKEY PVLDSSLPDI 180 KNCIYATDEF RMYSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKFHY SCVPCPDFKR 240 GDCRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTGCARRV CFFAHTPDEL RPLYSSTGSA 300 VHSPRSGGDF AAGLSPMSPL SPSSSAMSWP HPNVPALHLP GSNLQSSRLR ASLNARDVHQ 360 DVLSDYEQEQ LLNEFSNSLS WSGRMKSLPH SNLDDLFSPE GGSSSSPRFT DSAVFSPTHK 420 SAVFNQFQQH QQQQQSMLSS PKSVDHSLFS GGGRMSPRNV VEPISPMSSR VSMLAQQQQH 480 RFRSLSSREL RTNTSPVVGS PVNNSSWWGS SNGEPDWGMS SEEALGKLRS SSSFDGDDDE 540 PDVSWVQSLV KESTPNEAKE NSKKPATVEV VTDNAGLEAW IEQMQLDQLI PQHN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013629778.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013629778.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Refseq | XP_013629779.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A0D3B6A7 | 0.0 | A0A0D3B6A7_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g035820.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1785 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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