PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013629467.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 190aa MW: 21846.7 Da PI: 8.9896 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.2 | 4.2e-09 | 74 | 132 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +r +rk NRe+A+rsR +K++ ++e +L+ +N++Lk++l + ++++ k+e+ XP_013629467.1 74 RRKKRKSLNRESAKRSRVKKQKHLDEISVQLNQLKIQNRKLKNQLRYIYYHCQRTKMEN 132 78999999*********************************************999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.4E-8 | 66 | 120 | No hit | No description |
SMART | SM00338 | 2.2E-6 | 70 | 134 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.22 | 72 | 135 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.5E-7 | 74 | 122 | No hit | No description |
Pfam | PF00170 | 8.5E-7 | 74 | 132 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.53E-14 | 75 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSTISPVFSC EPGLTAPVQA SESGFTSWDI SHLFSFLDSS STNIIPDSAS EYLRPGSVNR 60 TGSNVDLTDC TDERRKKRKS LNRESAKRSR VKKQKHLDEI SVQLNQLKIQ NRKLKNQLRY 120 IYYHCQRTKM ENDRLRLEHR MLHDTLLNVR QVLMLCQIES SSECATWSYD NSTVVTVQQD 180 PSVITNHVIV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 94 | RRKKRKSLNRESAKRSRVKKQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013629467.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013629467.1 | 1e-140 | PREDICTED: ocs element-binding factor 1-like | ||||
TrEMBL | A0A0D3A9I7 | 1e-139 | A0A0D3A9I7_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g080160.1 | 1e-139 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3338 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49760.1 | 6e-71 | basic leucine-zipper 5 |