PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013629269.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 449aa    MW: 47556.1 Da    PI: 7.764
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013629269.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.5e-125175327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C +++rtG C yG+rC+F+H++
  XP_013629269.1 51 EPDCIYYLRTGVCGYGSRCRFNHPR 75
                    689********************96 PP
2zf-CCCH40.25.7e-1399124227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C++f+rtGtCkyG++Ck++H++
  XP_013629269.1  99 GQPVCQHFMRTGTCKYGASCKYHHPR 124
                     5789********************96 PP
3zf-CCCH39.49.7e-13145169226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG+Ck+G +C+F+H+
  XP_013629269.1 145 GEKECSYYMRTGQCKFGLTCRFNHP 169
                     7899********************9 PP
4zf-CCCH40.15.9e-13294318226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++f+rtG Ck+G++C+++H+
  XP_013629269.1 294 DQPECQYFMRTGDCKFGASCRYHHP 318
                     689*********************9 PP
5zf-CCCH32.61.3e-10340365227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     + + C +fa+ G+Ck+G+ CkF H++
  XP_013629269.1 340 GVAQCTHFAQHGICKFGPACKFDHSM 365
                     6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0234876IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-54875IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-95175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-55475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.27797125IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-697124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-798124IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-1099124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-6102124IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408143171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6145172IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10145169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4149168IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6292319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.91292320IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10294318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6295321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4298317IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4338365IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554338366IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-8340364IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5341365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0019632Biological Processshikimate metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0003855Molecular Function3-dehydroquinate dehydratase activity
GO:0004764Molecular Functionshikimate 3-dehydrogenase (NADP+) activity
GO:0046872Molecular Functionmetal ion binding
GO:0050661Molecular FunctionNADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MERYGRAGEE GSRSDPSVEW SSHGGETRVE ASMWRLGLSG GGEAYPERSN EPDCIYYLRT  60
GVCGYGSRCR FNHPRDRGAV VGGVRGGGGG DGALPERMGQ PVCQHFMRTG TCKYGASCKY  120
HHPRQGGGSV APVSLSYLGY PLRPGEKECS YYMRTGQCKF GLTCRFNHPV PQPQQQPQTQ  180
TIYPTFQSQP MPSSQQYGLV LTRPSLLPGS YLPSPYGPPM VLPPGMVTYP NWNPYQASLT  240
AMPSPGTGTQ QSIGSSSVYG IAPSPSGTGY TGTYQSGGPS LTTSKEEPFP QRPDQPECQY  300
FMRTGDCKFG ASCRYHHPLD AVQTNTGVLL SPIGLPLRPG VAQCTHFAQH GICKFGPACK  360
FDHSMASSLS YSPSASSLTD MPVAPYPIGS STLSGASAPV SSSIEPTMEA VTAVVSSPMV  420
SGLSSQEPAE TGGDSASISG SIEAKTSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013629269.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629269.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X2
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLA0A0D3B9Z30.0A0A0D3B9Z3_BRAOL; Uncharacterized protein
STRINGBo3g060560.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-179C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]