PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013629268.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 856aa    MW: 93661.5 Da    PI: 7.958
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013629268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-115175327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    ++ C +++rtG C yG+rC+F+H++
  XP_013629268.1 51 EPDCIYYLRTGVCGYGSRCRFNHPR 75
                    689********************96 PP
2zf-CCCH39.11.2e-1299124227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C++f+rtGtCkyG++Ck++H++
  XP_013629268.1  99 GQPVCQHFMRTGTCKYGASCKYHHPR 124
                     5789********************96 PP
3zf-CCCH38.42.1e-12145169226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG+Ck+G +C+F+H+
  XP_013629268.1 145 GEKECSYYMRTGQCKFGLTCRFNHP 169
                     7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0234876IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-54875IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-95175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-55475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.27797125IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-697124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-698124IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-1099124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5102124IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408143171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5145172IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-10145169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4149168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.701.2E-76335569IPR013785Aldolase-type TIM barrel
SuperFamilySSF515695.13E-68337568No hitNo description
CDDcd005022.58E-64347568IPR0013813-dehydroquinate dehydratase type I
HamapMF_0021432.947347569IPR0013813-dehydroquinate dehydratase type I
TIGRFAMsTIGR010935.1E-63348565IPR0013813-dehydroquinate dehydratase type I
PfamPF014871.3E-69349566IPR0013813-dehydroquinate dehydratase type I
SuperFamilySSF532231.15E-29567674No hitNo description
Gene3DG3DSA:3.40.192.108.3E-36572678No hitNo description
HamapMF_0022229.765575855IPR022893Shikimate dehydrogenase family
TIGRFAMsTIGR005075.3E-62577844IPR011342Shikimate dehydrogenase
PfamPF085011.2E-24580659IPR013708Shikimate dehydrogenase substrate binding, N-terminal
Gene3DG3DSA:3.40.50.7201.9E-45679854IPR016040NAD(P)-binding domain
SuperFamilySSF517354.18E-37702854IPR016040NAD(P)-binding domain
PfamPF014882.6E-10703776IPR006151Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase
CDDcd010651.99E-35726841No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0019632Biological Processshikimate metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0003855Molecular Function3-dehydroquinate dehydratase activity
GO:0004764Molecular Functionshikimate 3-dehydrogenase (NADP+) activity
GO:0046872Molecular Functionmetal ion binding
GO:0050661Molecular FunctionNADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MERYGRAGEE GSRSDPSVEW SSHGGETRVE ASMWRLGLSG GGEAYPERSN EPDCIYYLRT  60
GVCGYGSRCR FNHPRDRGAV VGGVRGGGGG DGALPERMGQ PVCQHFMRTG TCKYGASCKY  120
HHPRQGGGSV APVSLSYLGY PLRPGEKECS YYMRTGQCKF GLTCRFNHPV PQPQQQPQTQ  180
TIYPTFQSQP MPSSQQYGLV LTRPSLLPGS YLPSPYGPPM VLPPGMVTYP NWNPYQNLKF  240
WKRVEKAGDS MASTFSTNAR LTNPPPPRHL LSTPPTSVAN LRLPSARSKS NLFSAEFSSL  300
QIRTVPVPVV FSDQLRRQSM KPSNVYVASD SMETEMGSQK LAKNPSLICA PVMGDSVDEM  360
VTETCKAQEL GADLVEIRLD CLKQFNPLED LKIIIQKSPL PTLFTYRPKW EGGQYEGDEK  420
ERLDALRLAM ELGADYIDVE LQVAEEFIKS IKEKKPENFR AIVSSHNYQS TPSVEDLNDL  480
ALRIQQSGAD IVKIATTAVD ITDVSRMFHI TSNAQVPTIG LVMGERGLMS RILCSKFGGY  540
LTFGTLESGK VSAPGQPTIK ELLDLYNFRR IGPDTRVYGI IGKPVSHSKS PIVHNQAFKS  600
VDFNGVYVHL LVDDLASFLK TYSSSDFAGF SCTIPHKEDA LKCCDEVDPL AKSIGAVSTM  660
LRRQSDGKLL GYNTDCIGSI SAIEGGLRSS SNPSSVPSSS SSPLAGKTVV VIGAGGAGKA  720
LAYGAKEKGA KVVIANRTYE RAVKLAEAIG GRALSLTDLD NFHPEDGMVL ANTTSMGMQP  780
NVDETPISKD ALKHYSLVFD AVYTPRITRL LREAEECGAI TVSGSEMFVR QAYEQFEIFT  840
GLPAPKELYW QIMSKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gpt_A0.034285615143-dehydroquinate dehydratase/ shikimate 5-dehydrogenase
2o7q_A0.03428561514Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
2o7s_A0.03428561514Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013629268.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629268.10.0PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like isoform X1
SwissprotQ9SQT80.0DHQSD_ARATH; Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic
TrEMBLA0A0D3B9Z20.0A0A0D3B9Z2_BRAOL; Uncharacterized protein
STRINGBo3g060550.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.17e-94C3H family protein
Publications ? help Back to Top
  1. Bischoff M, et al.
    Molecular characterization of tomato 3-dehydroquinate dehydratase-shikimate:NADP oxidoreductase.
    Plant Physiol., 2001. 125(4): p. 1891-900
    [PMID:11299368]
  2. Singh SA,Christendat D
    Structure of Arabidopsis dehydroquinate dehydratase-shikimate dehydrogenase and implications for metabolic channeling in the shikimate pathway.
    Biochemistry, 2006. 45(25): p. 7787-96
    [PMID:16784230]
  3. Gibon Y, et al.
    Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes.
    Genome Biol., 2006. 7(8): p. R76
    [PMID:16916443]
  4. Rutschow H,Ytterberg AJ,Friso G,Nilsson R,van Wijk KJ
    Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis.
    Plant Physiol., 2008. 148(1): p. 156-75
    [PMID:18633119]
  5. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  6. Gritsunov A,Peek J,Diaz Caballero J,Guttman D,Christendat D
    Structural and biochemical approaches uncover multiple evolutionary trajectories of plant quinate dehydrogenases.
    Plant J., 2018.
    [PMID:29890023]
  7. Bonner CA,Jensen RA
    Cloning of cDNA encoding the bifunctional dehydroquinase.shikimate dehydrogenase of aromatic-amino-acid biosynthesis in Nicotiana tabacum.
    Biochem. J., 1994. 302 ( Pt 1): p. 11-4
    [PMID:8067995]