PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013629217.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 260aa    MW: 29674.5 Da    PI: 9.2148
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013629217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00166690223
                    EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  2 kCp..dCgksFsrksnLkrHirt.H 23
                    +Cp   C+++ ++ +n++ H +t H
  XP_013629217.1 66 SCPivGCPERLKSLDNFEDHYKTrH 90
                    69999*****************999 PP
2zf-C2H214.88.5e-0593115223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+++++++ +L  Hi+  H
  XP_013629217.1  93 SCSVCSRVYPTSRLLSIHISEaH 115
                     6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0796590IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806790IPR007087Zinc finger, C2H2
SMARTSM00355592115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094115IPR007087Zinc finger, C2H2
SMARTSM003550.069130155IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280132155IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAVDTVGELG FPYWNPLRRR FPPDSPFFAS GNVERELLAK QVALDFTEDE ITNLQTIVET  60
ESRRISCPIV GCPERLKSLD NFEDHYKTRH TASCSVCSRV YPTSRLLSIH ISEAHDSFFQ  120
AKVARGYDMY ECLVEGCGLK FKSYKARHRH LIDKHKFPTT FEFFKRTQLS KKRREKLQRQ  180
RVPKLKHEED KEEASSDAME VEDKASLDGL VSALSTLTTS DTTPSNVSFG RRHGRGLTFV  240
PRSVHREKPT NSSSTPGSKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175KKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013629217.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629217.10.0PREDICTED: zinc finger protein 511
TrEMBLA0A0D3B1320.0A0A0D3B132_BRAOL; Uncharacterized protein
STRINGBo3g009650.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-168zinc ion binding;nucleic acid binding;zinc ion binding