PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013628204.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 227aa    MW: 26600.8 Da    PI: 6.2416
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013628204.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.32.9e-34411322102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y+++ed++++e+isw+ +g+ f+v+++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+kv++++         weF ++ F+kg++el+++
  XP_013628204.1  41 FLVKTYKVVEDPTTDEVISWNGDGTGFIVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVSTTR---------WEFGNEMFRKGQRELMCN 126
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+ks
  XP_013628204.1 127 IRRRKS 132
                     ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3631125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5437130IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.35E-3237130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.1E-184164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3041130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-187991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-1892104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEDDHLLCHD NINDEERLPL EFMTGKQTST AELQPSQRPP FLVKTYKVVE DPTTDEVISW  60
NGDGTGFIVW QPAEFARDLL PTLFKHCNFS SFVRQLNTYG FRKVSTTRWE FGNEMFRKGQ  120
RELMCNIRRR KSYPHSHSHN KSHQVVPTTT TENLEDHHLQ DQRSSSVVYS ALLDENKCLK  180
NENEFLRSEL GKTKKKCKQL MELVERYRGE EDDDDDQGLK LFGVKLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-223513014120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013628204.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628204.11e-171PREDICTED: heat stress transcription factor B-3
SwissprotO222301e-119HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A0D3B6A01e-170A0A0D3B6A0_BRAOL; Uncharacterized protein
STRINGBo3g035750.11e-170(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-121heat shock transcription factor B3