PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013628160.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 294aa    MW: 33225 Da    PI: 8.1189
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013628160.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.2e-083454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C f+++ G+C+yG rC++ H+
  XP_013628160.1 34 VCTFYLK-GICSYGTRCRYEHV 54
                    5******.***********997 PP
2zf-CCCH20.48.9e-077798426
                    ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                    ++C+ fa+ G C++G++C+ +Hg
  XP_013628160.1 77 PICS-FAAAGDCPRGSQCPHMHG 98
                    7899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.784128IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7426IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-53053IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-43155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1883456IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-53454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.54973100IPR000571Zinc finger, CCCH-type
SMARTSM003560.00397499IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.8E-10123201IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.14E-13131206No hitNo description
CDDcd001620.00253141201No hitNo description
PROSITE profilePS5008912.386142200IPR001841Zinc finger, RING-type
PfamPF000976.4E-8142199IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001848.7E-8142199IPR001841Zinc finger, RING-type
PROSITE patternPS005180166175IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.404229258IPR000571Zinc finger, CCCH-type
SMARTSM003560.53229257IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSDRILCKFF VHGSCLKGEN CEYSHDSKHH ANNVCTFYLK GICSYGTRCR YEHVRTSKRD  60
GDHKALNLCY THPREHPICS FAAAGDCPRG SQCPHMHGDV CSTCGKKCLH PFRPEEREEH  120
TKECEKKQKH IEALKKSQEI ECSVCLDRVL SKATPGERKF GLLTECHHPF CIQCIRNWRS  180
SAPVSGMDVN STLRACPICR KLSYFVVPSV VWYSSPEEKK EIIDIYKAKL RSIDCKHFNF  240
GNGSCPFGGS CFYKHAYTDG NLEEVVVRHL GSQGETVIAD SVAGLSEFLG RVHL
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013628160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628160.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like
RefseqXP_013628161.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like
RefseqXP_013684616.10.0E3 ubiquitin-protein ligase makorin
RefseqXP_013684617.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ6IDS60.0C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLA0A078F3I50.0A0A078F3I5_BRANA; BnaC03g35670D protein
TrEMBLA0A0D3BAA30.0A0A0D3BAA3_BRAOL; Uncharacterized protein
STRINGBo3g061660.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-172C3H family protein