PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013628153.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 379aa    MW: 42959.9 Da    PI: 9.6906
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013628153.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-1614961198
                    HHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 11 lksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    + s+ l++p  f+++h    ++++++++l+    s ++Wevk   + ++ r  lt+GWkeF+ a++L++gD+++F+ +++++f  +v++f 
  XP_013628153.1 14 FHSH-LTIPVAFFSKHiqgRNDQKTTTELRSDAASEKTWEVKT--EDGR-R--LTDGWKEFALAHDLRVGDILIFRQEKDMTF--HVTLFG 96
                    4555.************7633333445666666899*******..4444.3..9**********************5555555..999886 PP
2B370.52.1e-22145227894
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     +++l+ + l lp++f++++g++++++ +++l + +grsW++ l+ +++ gr ++t+GW++F +angLk+gD+++Fkl++r ++  +v
  XP_013628153.1 145 PSTLRYDSLNLPRSFVRANGLETRCG-DIVLINGKGRSWTLSLK-QRQCGRSYITRGWRSFFSANGLKAGDSFTFKLIKRGGT--LV 227
                     67788899*************99887.****************5.666666789************************97554..34 PP
3B352.68.5e-17286373293
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ++ ++++++  ++ l lpk+f++ hg+    +++++l d++g +W  kl  r  s+r+ +++GWk+F kan +k+g+++ +kl++++++++v
  XP_013628153.1 286 VTLTLKPYNVIKRVLFLPKPFTDLHGIT--VGTKMSLVDKQGVKWCTKL--RSESKRIRMAGGWKDFFKANCVKTGESIKLKLIWEEDTSCV 373
                     55566677777778********999876..4569***************..**********************************9877555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.774398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-234110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-194105IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-16495No hitNo description
SMARTSM010199.8E-19698IPR003340B3 DNA binding domain
PfamPF023627.6E-121595IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-23131231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-20132230IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.876138233IPR003340B3 DNA binding domain
CDDcd100171.83E-20138229No hitNo description
SMARTSM010191.6E-25139234IPR003340B3 DNA binding domain
PfamPF023622.2E-20143227IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-16277370IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-17282368IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-13284374No hitNo description
PROSITE profilePS5086312.83285379IPR003340B3 DNA binding domain
PfamPF023628.8E-15285373IPR003340B3 DNA binding domain
SMARTSM010191.2E-18285378IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAKRHFFQPL LPGFHSHLTI PVAFFSKHIQ GRNDQKTTTE LRSDAASEKT WEVKTEDGRR  60
LTDGWKEFAL AHDLRVGDIL IFRQEKDMTF HVTLFGPSCC EIQYDSCLDD KNSIGKINSK  120
KNNPKREAEC SSSSDPSCFL ANVMPSTLRY DSLNLPRSFV RANGLETRCG DIVLINGKGR  180
SWTLSLKQRQ CGRSYITRGW RSFFSANGLK AGDSFTFKLI KRGGTLVLLH KSPSHRESKE  240
NEGSEADDEI ESLSTESDSD EESNQDEKKR ISIWNASSSP SLNRFVTLTL KPYNVIKRVL  300
FLPKPFTDLH GITVGTKMSL VDKQGVKWCT KLRSESKRIR MAGGWKDFFK ANCVKTGESI  360
KLKLIWEEDT SCVLSSKPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013628153.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894330.0AC189433.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628153.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotO230761e-107REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A0D3B4F40.0A0A0D3B4F4_BRAOL; Uncharacterized protein
STRINGBo3g025330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-100B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]