PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627920.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 337aa    MW: 38196.6 Da    PI: 7.1762
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627920.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-06117133926
                     GGGTS--TTTTT-SS-SS CS
         zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                     f++ G Ck Gd+C FaHg
  XP_013627920.1 117 FRK-GGCKKGDSCEFAHG 133
                     666.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.272108135IPR000571Zinc finger, CCCH-type
SMARTSM003560.2109134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4116135IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4117133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4140170IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.338143167IPR000571Zinc finger, CCCH-type
SMARTSM003561.4143166IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MIGETREPYP TVQSPTWPVS DDFTTAEFFS PAINRPDCSM LEALTALHRY LPSNESYPDS  60
DPEPFGPDSP VDAHSCDHFR MYDFKVLRCS RGRSHDWTEC PYAHPGEKAR RRDPMKFRKG  120
GCKKGDSCEF AHGVFECWLH PSRYRTQPCK DGGGCRRRVC FFAHSPDQLR YVQTRSPDRV  180
DSYVRAFQLS ISHVSSSPPV SPRADSESSQ SLSRSLGSSY INDVTTSFRN LRFEKLKSFP  240
SSYKNPFRCY QSGFGSPRGS MLGPGFQSLP TTPARPENLD IWENGLEEEP AMDRVAESGR  300
ELRAKMFEKL SKENCMDRVE PDQNSGDAPM SSGYLNM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.9551e-57leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528161e-113AK352816.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-K04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627920.10.0PREDICTED: zinc finger CCCH domain-containing protein 49-like
SwissprotQ9M0G21e-179C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A0D3BMD10.0A0A0D3BMD1_BRAOL; Uncharacterized protein
STRINGBo3g178200.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-162C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]