PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627772.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 300aa    MW: 33633.7 Da    PI: 6.7894
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627772.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.35.7e-27164224259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dD ++WrKYGqKe+  s+fpr+YYrCt++   +Cp+kk+v+r ++dp ++ +tY+g+H+++
  XP_013627772.1 164 DDNHTWRKYGQKEILHSKFPRAYYRCTHQklyNCPAKKQVQRLNDDPFTFRVTYRGSHTCH 224
                     8****************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-26158224IPR003657WRKY domain
SuperFamilySSF1182906.67E-25161225IPR003657WRKY domain
SMARTSM007742.7E-35163225IPR003657WRKY domain
PfamPF031061.2E-24164224IPR003657WRKY domain
PROSITE profilePS5081119.21164226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEEVMSIIFH GMKLVDELKS SLQEKSPESL STSLDEITKT FDDAKERLKI VLVIRNSETA  60
MNQVKPVISS CSDRMLMQIE PDLMQEYWLR YGGSTSSHGT EVVTQRQLMA VDGDGGRNLT  120
ATERSGGSGS GSSTPRQRRR KNEGEEQTVL VPALRSGNTD LPPDDNHTWR KYGQKEILHS  180
KFPRAYYRCT HQKLYNCPAK KQVQRLNDDP FTFRVTYRGS HTCHIYSTAP TASAAAPTAP  240
ITTTATTSHP VDYGPFFDMP EAMMLGSGGI GDNMDFIFPC NDPPHHHHCY RRQEDGDGDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20164223968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627772.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627772.10.0PREDICTED: WRKY transcription factor 55-like
SwissprotQ9SHB51e-155WRK55_ARATH; WRKY transcription factor 55
TrEMBLA0A0D3B6380.0A0A0D3B638_BRAOL; Uncharacterized protein
STRINGBo3g035130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-141WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]