PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627620.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 204aa    MW: 22406 Da    PI: 8.849
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627620.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016121143123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+Cg  F+    L  H+r+H
  XP_013627620.1 121 HRCPICGVEFPMGQALGGHMRKH 143
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-76589No hitNo description
PfamPF139129.4E-106690IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6816794IPR007087Zinc finger, C2H2
SMARTSM003550.626789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-7116143No hitNo description
SMARTSM003550.024121143IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-11121144IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492121148IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVSRSENLNR TVENRAQDSE KLDRTVEGTA ANNEKLERTV EDKAANCLML LSRIGENGGG  60
GRESRVYRCK TCMKEFSSFQ SLGGHRASHN KHVNNNSSDE QSSLSSGSIA KRKTTNTTRS  120
HRCPICGVEF PMGQALGGHM RKHRNEEEAS GALVTRSFFP EAAASMITTL KKSSSGKRVE  180
CFDLGPDSVE SSINLNLELG RSMY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627620.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627620.11e-149PREDICTED: zinc finger protein ZAT8-like
SwissprotQ9LX859e-70ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A0D3BHG21e-148A0A0D3BHG2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AWF81e-148A0A3P6AWF8_BRAOL; Uncharacterized protein
STRINGBo3g130310.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.11e-67C2H2 family protein