PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627466.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 383aa    MW: 43294.6 Da    PI: 8.0129
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627466.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000176285123
                    EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                    ++C+ Cgk F+    L +H+   H
  XP_013627466.1 62 FRCGECGKGFRYEKCLSNHQAGmH 85
                    89*****************98666 PP
2zf-C2H210.70.0017336358123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  C+k+Fs+   L  H+ +H
  XP_013627466.1 336 HQCRLCSKVFSSYQALGGHQTSH 358
                     79**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.1776290IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-46281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0376285IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806485IPR007087Zinc finger, C2H2
SuperFamilySSF576673.08E-5333362No hitNo description
PfamPF139128.0E-9336359IPR007087Zinc finger, C2H2
SMARTSM003550.061336358IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305336363IPR007087Zinc finger, C2H2
PROSITE patternPS000280338358IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEEQHQRGVL RPLKNTRSRE EEEPTRQKRD HSCYYGLRQN PKKTTHKSFA LESSEPRKKI  60
LFRCGECGKG FRYEKCLSNH QAGMHLSKIQ RVCEESIKSL CGSFSLVRKK KRSRVFRYKK  120
TLFTTFLGSS SVFGESDEEL EVAECLILLS KSSPKDVVNG KKLVGEATDV TPERLNGYLR  180
SKKVRKAAEF EYGFLSNEQK LLEEGDSNEI DQQLVGEAME AVPETIHGYL RGKKLRKGGE  240
FEYGFLNNEH KLLEERVSTL EAPKEPASFL GGSSEIDQQK QRRACGYDSV ISGYETWKEA  300
ASFLGDKFEL GVGAFECSDS DDEIVTESSG KGNAEHQCRL CSKVFSSYQA LGGHQTSHRM  360
SRSKSKKSCR EESVELDDDA AQV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627466.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325390.0AC232539.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH003M07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627466.10.0PREDICTED: uncharacterized protein LOC106333581
TrEMBLA0A3P6AQI60.0A0A3P6AQI6_BRAOL; Uncharacterized protein
STRINGBra006302.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.12e-98C2H2 family protein