PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013627343.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 399aa MW: 44560 Da PI: 9.3523 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00063 | 342 | 364 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F++ L H r+H XP_013627343.1 342 HECPICFRVFKSGQALGGHKRSH 364 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.02E-5 | 7 | 31 | No hit | No description |
SMART | SM00355 | 0.51 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.325 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.1E-4 | 9 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.02E-5 | 83 | 110 | No hit | No description |
SMART | SM00355 | 0.043 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.388 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-4 | 90 | 112 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 342 | 364 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.0E-10 | 342 | 364 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.974 | 342 | 364 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 344 | 364 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MEQCQERKFA CRFCSKRFPC GKSLGGHIRT HMNHENSADS DELNNLRVDE NGGNSSYGLR 60 ENPKKNKRFV VQRSMMALKH QQHQQQLLYC RECGKGFPSS KALCGHMACH SEREKIVMDS 120 QSETEASSSP TRRRSKRVVG GSIMNQYGSA SSDDTGIEPE QEEMALSLMM MSRDSSFKKG 180 HNMAESSDYS VILETKSSSG EQLKKFCKQD KLGGVDVLYE SDNSDSGYFR NGPKKLDSDV 240 SVDAGFINNA AMGLNNRFRK ERSGTGSGRS STKYDLRKSK RGFPCYGRKK TKYELAESVY 300 DSGDQLSLET ESCADTIKIH SNRSTMVKKA SGGGAKKKSK GHECPICFRV FKSGQALGGH 360 KRSHFLGNHE HRTLVIQQQH QVAHEMHTLI DLNLPAPID |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013627343.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189429 | 1e-129 | AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence. | |||
GenBank | HM560966 | 1e-129 | HM560966.1 Brassica rapa subsp. chinensis C2H2 zinc finger transcription factor (MF20) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013627343.1 | 0.0 | PREDICTED: zinc finger protein ZAT4-like | ||||
Refseq | XP_013627344.1 | 0.0 | PREDICTED: zinc finger protein ZAT4-like | ||||
TrEMBL | A0A078GFN8 | 0.0 | A0A078GFN8_BRANA; BnaC03g57380D protein | ||||
TrEMBL | A0A0D3BHZ7 | 0.0 | A0A0D3BHZ7_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g137110.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1900 | 21 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 0.0 | C2H2-like zinc finger protein |