PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013627232.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 319aa    MW: 35687.4 Da    PI: 9.4033
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013627232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-05931123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C+ C+k F++  +L  Hir H
  XP_013627232.1  9 YMCKFCNKKFPSGKSLGGHIRIH 31
                    89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.5E-6633IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.49E-7634No hitNo description
SMARTSM003550.0061931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.51936IPR007087Zinc finger, C2H2
PfamPF139123.2E-51027IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.46992IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3076997IPR007087Zinc finger, C2H2
PfamPF139120.0577094IPR007087Zinc finger, C2H2
PROSITE patternPS0002807092IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-57091No hitNo description
SuperFamilySSF576671.59E-5265292No hitNo description
PfamPF139123.3E-8270292IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162270293IPR007087Zinc finger, C2H2
SMARTSM003550.19270292IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280272292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEKMIEREYM CKFCNKKFPS GKSLGGHIRI HTNHYSLLSS SYNNAKNPKK KKKKKKKKRL  60
VAMKQQQQLC CRECGKAFDS LKALWNHMDC CHCEGEKLVM DSQSDTETTS SGPTRKRSKK  120
QFSSESFSNG SSSSSACEID QEHKNSVLSL MMMSMDSRGL TLVVNSLVAE SSENNSVGDD  180
NGAILYDSYS SDSDYFMNGP KRSDSAISVD GCLSNNGDDL AVKEGRSKYE LRKSKRVVLP  240
CYESDSCAVD TNSKIHSKKA ISANKNGKCH ECPFCFRVFK SGQALGGHKR SHSFVNQEHR  300
VKHKAADMRI DLNRPAHDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14857KKKKKKKKKK
25058KKKKKKKKR
35258KKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013627232.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627232.10.0PREDICTED: zinc finger protein ZAT9-like
RefseqXP_013627233.10.0PREDICTED: zinc finger protein ZAT9-like
RefseqXP_013627234.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A3P6BI260.0A0A3P6BI26_BRAOL; Uncharacterized protein
STRINGBo3g137160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.12e-64C2H2-like zinc finger protein