PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013627102.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 26092.4 Da PI: 9.9976 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.8 | 6.8e-29 | 15 | 65 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rq+tfskRrng++KKA+ELSvLCda+va i+fs++g+lye+ss XP_013627102.1 15 KKIENRTSRQITFSKRRNGLFKKAHELSVLCDAQVAAIVFSQSGRLYEFSS 65 68***********************************************96 PP | |||||||
2 | K-box | 59.8 | 1.1e-20 | 95 | 177 | 15 | 97 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +l++e++ + k+i+ L+ qR+l+G++L+s+sl +Lq L +q+eksl+ iRs+K el+ +q+ +l++ke+el ++ ++Lr++ XP_013627102.1 95 LELKKEMDIMVKKIDLLEVHQRKLMGQGLGSCSLAQLQGLDTQIEKSLRIIRSRKAELYADQLLKLKEKERELLDQRRRLREE 177 57899***************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.875 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.5E-41 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-29 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.33E-42 | 9 | 79 | No hit | No description |
SuperFamily | SSF55455 | 2.75E-32 | 9 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.1E-27 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-29 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-29 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.831 | 94 | 185 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.8E-19 | 96 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MLVIGKMVRG KIEIKKIENR TSRQITFSKR RNGLFKKAHE LSVLCDAQVA AIVFSQSGRL 60 YEFSSSEMEK TIERYGKFSP DYFVSGRPQE ELYLLELKKE MDIMVKKIDL LEVHQRKLMG 120 QGLGSCSLAQ LQGLDTQIEK SLRIIRSRKA ELYADQLLKL KEKERELLDQ RRRLREEEIR 180 ETLVRPMLPV TLHTGKDETG SACRMSKHSS EVETDLFIGF PVTRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 9e-19 | 7 | 79 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 9e-19 | 7 | 79 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 9e-19 | 7 | 79 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 9e-19 | 7 | 79 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6byy_A | 9e-19 | 7 | 79 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 9e-19 | 7 | 79 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 9e-19 | 7 | 79 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 9e-19 | 7 | 79 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 9e-19 | 7 | 79 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 9e-19 | 7 | 79 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 9e-19 | 7 | 79 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 9e-19 | 7 | 79 | 1 | 73 | MEF2 CHIMERA |
6c9l_A | 9e-19 | 7 | 79 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 9e-19 | 7 | 79 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 9e-19 | 7 | 79 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 9e-19 | 7 | 79 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 9e-19 | 7 | 79 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 9e-19 | 7 | 79 | 1 | 73 | Myocyte-specific enhancer factor 2B |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013627102.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013627102.1 | 1e-162 | PREDICTED: MADS-box protein SOC1-like isoform X1 | ||||
Swissprot | Q9LT93 | 1e-105 | AGL71_ARATH; MADS-box protein AGL71 | ||||
TrEMBL | A0A078H719 | 1e-156 | A0A078H719_BRANA; BnaC03g15810D protein | ||||
TrEMBL | A0A0D3B3X8 | 1e-156 | A0A0D3B3X8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6A8X2 | 1e-156 | A0A3P6A8X2_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g023570.1 | 1e-157 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51870.3 | 7e-92 | AGAMOUS-like 71 |