PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626894.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 276aa    MW: 30144.1 Da    PI: 8.5945
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00087184206123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+  Fs+   L  H+r+H
  XP_013626894.1 184 HECSICKAEFSSGQALGGHMRRH 206
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.7E-11110135IPR007087Zinc finger, C2H2
SuperFamilySSF576677.68E-10110133No hitNo description
SMARTSM003550.061111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.575111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576677.68E-10179206No hitNo description
Gene3DG3DSA:3.30.160.605.2E-4181208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-12183208IPR007087Zinc finger, C2H2
SMARTSM003550.031184206IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328184211IPR007087Zinc finger, C2H2
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MTSVHEETRL VLLIKGKRTK RQRSASPHIK AEVMSSVCNE ERSLEAREEG AGEIEFRGAT  60
DEDQDMANCL MLLSQGHKSN TSGDPLLTHK IGFLSNKKPV ASLVLGLNGV YQCKTCDKSF  120
HSFQALGGHR TSHKKPKLGA IVLKCDEKKS ASAVKTVEAA RVVGSFLSLQ VTSSDGSKKQ  180
EKTHECSICK AEFSSGQALG GHMRRHRGLT LNANANSTIR TATSSSHNQE SIRENNFMEL  240
DLNLPAPEDE PKFVFASKDQ IILFAAASNS LIDCHH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626894.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325220.0AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626894.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A0D3AZK20.0A0A0D3AZK2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ACN20.0A0A3P6ACN2_BRAOL; Uncharacterized protein
STRINGBo3g002370.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-145C2H2 family protein