PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013626879.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 292aa MW: 34579.8 Da PI: 8.1161

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013626879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.1	3.1e-25	42	124	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++Li++r e+++++ ++k++k lWe vs+kmr + f rsp+qCk+kw+nl +r+k +++++ + +++++p++d++e XP_013626879.1 42 QWSLEETKELIAIRGELDQTFMETKRNKLLWEVVSNKMRVKSFLRSPEQCKCKWKNLVTRFKGCETTDAES---ARQQFPFYDDME 124 7******************************************************************84...45689***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0023	39	101	IPR001005	SANT/Myb domain
CDD	cd12203	1.71E-21	41	106	No hit	No description
Pfam	PF13837	1.5E-19	42	124	No hit	No description
PROSITE profile	PS50090	7.538	43	99	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MDGRQLHHLQ YLNKHNHHVH PQSQTPEIAS PATVAAGDRF PQWSLEETKE LIAIRGELDQ 60 TFMETKRNKL LWEVVSNKMR VKSFLRSPEQ CKCKWKNLVT RFKGCETTDA ESARQQFPFY 120 DDMEIIFTSR MQRMIWVESE GGGGGASGTT RKRSHSEQFS SDEEEENVNE ELVDISNDPK 180 ILNPKKNIVK KRKGGISNSN ASNSVREVLD EFMRHQMRME NGWRERWEAR EKERAEREEE 240 WRGKMEEIEK ERVKMERMWR DREDQRRSRE ETRAEKRDSL INALLAKLTR DG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	5e-13	39	120	3	84	DNA binding protein GT-1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	192	PKKNIVKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269\|PubMed:15310827}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013626879.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269\|PubMed:15310827}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF453582	0.0	AF453582.1 Arabidopsis thaliana GT-1 like transcription factor (GT1L) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013626879.1	0.0	PREDICTED: trihelix transcription factor GT-3b-like
Swissprot	O80450	1e-123	TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBL	A0A078FNK2	0.0	A0A078FNK2_BRANA; BnaC03g21210D protein
TrEMBL	A0A0D3B5K5	0.0	A0A0D3B5K5_BRAOL; Uncharacterized protein
STRING	Bo3g032310.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2215	28	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	1e-108	Trihelix family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]