PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626801.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 319aa    MW: 37767.1 Da    PI: 5.9168
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.78.6e-2546128186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +e+++L+ +r+++++++ ++k++k lWe v++km+++gf rs++qCk+kw+nl +ryk+++++e +     ++++p++++++
  XP_013626801.1  46 QWSIEETKELLGIREDLDQTFMETKRNKLLWEVVAAKMADKGFARSAEQCKSKWKNLVTRYKACETTEPEA---IRQQFPFYSEIQ 128
                     7********************************************************************85...566899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122033.05E-2245107No hitNo description
PfamPF138371.8E-2046129No hitNo description
PROSITE profilePS500907.87547103IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDRRNPFHHH DHELYHLIQQ QQLPLPPQST TAAMDSSGGG GERIPQWSIE ETKELLGIRE  60
DLDQTFMETK RNKLLWEVVA AKMADKGFAR SAEQCKSKWK NLVTRYKACE TTEPEAIRQQ  120
FPFYSEIQSI FTARMQRNLW SEATEGSTSS KRKHHQFSSD EEEEDQVEEP NQDINEELLS  180
FIETDKKKAE VITTSTSTDP RKRVKKGKGI FTGSTKAETA GSTFKEILED FLRQTVKMEK  240
EWIDAWEMKE REREKRENEW RRRMADLEEE RAAAEKRWME REDERRLREE ARGRKRDTLI  300
DALLNKLNRD HNDDHYQGF
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626801.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893620.0AC189362.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045I17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626801.10.0PREDICTED: trihelix transcription factor GT-3a-like
RefseqXP_013730093.10.0trihelix transcription factor GT-3a
SwissprotQ9SDW01e-144TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A0D3AZB10.0A0A0D3AZB1_BRAOL; Uncharacterized protein
TrEMBLA0A3P5ZXC60.0A0A3P5ZXC6_BRAOL; Uncharacterized protein
STRINGBo3g001460.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-136Trihelix family protein