PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626703.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 420aa    MW: 46216.4 Da    PI: 9.6649
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626703.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30155211360
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     DgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkvers   + v ei+Y+geHnh+k
  XP_013626703.1 155 DGYNWRKYGQKQVKGSDCPRSYYKCTHPKCPVKKKVERSM-GGLVSEIVYQGEHNHSK 211
                     9***************************************.9**************85 PP
2WRKY102.91.8e-32340397259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+v g+ +prsYYrCtsa+C+++k+ver+++dp+++++tYeg+Hnh+
  XP_013626703.1 340 EDGFRWRKYGQKVVGGNAHPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHH 397
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-26150212IPR003657WRKY domain
SMARTSM007743.4E-32153211IPR003657WRKY domain
SuperFamilySSF1182907.85E-24154212IPR003657WRKY domain
PfamPF031065.8E-24155209IPR003657WRKY domain
PROSITE profilePS5081122.481155212IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-32328397IPR003657WRKY domain
SuperFamilySSF1182903.27E-27334397IPR003657WRKY domain
PROSITE profilePS5081131.709334399IPR003657WRKY domain
SMARTSM007742.4E-38339398IPR003657WRKY domain
PfamPF031065.1E-26340397IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MEVKESKRVV IAKPVASRPS FTSIRTFANL LTDSVTVPPH ETVDAAIRPK TLRFKQPAAA  60
SVSCPQVEGI DKGKSCDDSD TKSYVVYKPK AKLVSQATVS ALANMLQGNH QQVWRQSESV  120
PYGKSVSQGT RPNLVPRVPS FKESETSAGD RSSVDGYNWR KYGQKQVKGS DCPRSYYKCT  180
HPKCPVKKKV ERSMGGLVSE IVYQGEHNHS KPSCPLPRCA SSSSSSGFQR PQRELASEGS  240
IGQDPSNVYY HPLWSNQSND SSKSIAEKMN EGCVITPFEF AVPRSANSTG GTSDSGCRSC  300
SQCDEGELDD PSRSKRSRKN EKQASQTGVS QSSVDSDSLE DGFRWRKYGQ KVVGGNAHPR  360
SYYRCTSANC RARKHVERAS DDPRAFITTY EGKHNHHLNL RPPTSPTLPF TSTQHSNQAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-27155398978Probable WRKY transcription factor 4
2lex_A3e-27155398978Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626703.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931370.0KM593137.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626698.10.0PREDICTED: WRKY transcription factor 44-like isoform X1
SwissprotQ9ZUU00.0WRK44_ARATH; WRKY transcription factor 44
TrEMBLA0A3P6A6X70.0A0A3P6A6X7_BRAOL; Uncharacterized protein
STRINGBo3g031650.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.10.0WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]