PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013626701.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 435aa MW: 47850.5 Da PI: 9.7432 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.2e-30 | 171 | 227 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkvers + v ei+Y+geHnh+k XP_013626701.1 171 DGYNWRKYGQKQVKGSDCPRSYYKCTHPKCPVKKKVERSM-GGLVSEIVYQGEHNHSK 227 9***************************************.9**************85 PP | |||||||
2 | WRKY | 102.8 | 1.9e-32 | 355 | 412 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+v g+ +prsYYrCtsa+C+++k+ver+++dp+++++tYeg+Hnh+ XP_013626701.1 355 EDGFRWRKYGQKVVGGNAHPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHH 412 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-26 | 166 | 228 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-32 | 169 | 227 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.24E-24 | 170 | 228 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-24 | 171 | 225 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.481 | 171 | 228 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-32 | 343 | 412 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.709 | 349 | 414 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-27 | 349 | 412 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-38 | 354 | 413 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-26 | 355 | 412 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MLGIGVSHRP ICLRLTTIME VKESKRVVIA KPVASRPSFT SIRTFANLLT DSVTVPPHET 60 VDAAIRPKTL RFKQPAAASV SCPQVEGIDK GKSCDDSDTK SYVVYKPKAK LVSQATVSAL 120 ANMGNHQQVW RQSESVPYGK SVSQGTRPNL VPRVPSFKES ETSAGDRSSV DGYNWRKYGQ 180 KQVKGSDCPR SYYKCTHPKC PVKKKVERSM GGLVSEIVYQ GEHNHSKPSC PLPRCASSSS 240 SSGFQRPQRE LASEGSIGQD PSNVYYHPLW SNQSNDSSKS IAEKMNEGCV ITPFEFAVPR 300 SANSTGGTSD SGCRSCSQCD EGELDDPSRS KRRKNEKQAS QTGVSQSSVD SDSLEDGFRW 360 RKYGQKVVGG NAHPRSYYRC TSANCRARKH VERASDDPRA FITTYEGKHN HHLNLRPPTS 420 PTLPFTSTQH SNQAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-27 | 171 | 413 | 9 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-27 | 171 | 413 | 9 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013626701.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM593137 | 0.0 | KM593137.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626701.1 | 0.0 | PREDICTED: WRKY transcription factor 44-like isoform X4 | ||||
Swissprot | Q9ZUU0 | 0.0 | WRK44_ARATH; WRKY transcription factor 44 | ||||
TrEMBL | A0A0D3B5D9 | 0.0 | A0A0D3B5D9_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g031650.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.1 | 0.0 | WRKY family protein |