PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013626699.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 437aa MW: 48091.8 Da PI: 9.7432 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.2e-30 | 173 | 229 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkvers + v ei+Y+geHnh+k XP_013626699.1 173 DGYNWRKYGQKQVKGSDCPRSYYKCTHPKCPVKKKVERSM-GGLVSEIVYQGEHNHSK 229 9***************************************.9**************85 PP | |||||||
2 | WRKY | 102.8 | 1.9e-32 | 357 | 414 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+v g+ +prsYYrCtsa+C+++k+ver+++dp+++++tYeg+Hnh+ XP_013626699.1 357 EDGFRWRKYGQKVVGGNAHPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHH 414 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-26 | 168 | 230 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-32 | 171 | 229 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.24E-24 | 172 | 230 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-24 | 173 | 227 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.481 | 173 | 230 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-32 | 345 | 414 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.709 | 351 | 416 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-27 | 351 | 414 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-38 | 356 | 415 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-26 | 357 | 414 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 437 aa Download sequence Send to blast |
MLGIGVSHRP ICLRLTTIME VKESKRVVIA KPVASRPSFT SIRTFANLLT DSVTVPPHET 60 VDAAIRPKTL RFKQPAAASV SCPQVEGIDK GKSCDDSDTK SYVVYKPKAK LVSQATVSAL 120 ANMLQGNHQQ VWRQSESVPY GKSVSQGTRP NLVPRVPSFK ESETSAGDRS SVDGYNWRKY 180 GQKQVKGSDC PRSYYKCTHP KCPVKKKVER SMGGLVSEIV YQGEHNHSKP SCPLPRCASS 240 SSSSGFQRPQ RELASEGSIG QDPSNVYYHP LWSNQSNDSS KSIAEKMNEG CVITPFEFAV 300 PRSANSTGGT SDSGCRSCSQ CDEGELDDPS RSKRRKNEKQ ASQTGVSQSS VDSDSLEDGF 360 RWRKYGQKVV GGNAHPRSYY RCTSANCRAR KHVERASDDP RAFITTYEGK HNHHLNLRPP 420 TSPTLPFTST QHSNQAI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-27 | 173 | 415 | 9 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-27 | 173 | 415 | 9 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013626699.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KM593137 | 0.0 | KM593137.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626699.1 | 0.0 | PREDICTED: WRKY transcription factor 44-like isoform X2 | ||||
Swissprot | Q9ZUU0 | 0.0 | WRK44_ARATH; WRKY transcription factor 44 | ||||
TrEMBL | A0A0A7RI71 | 0.0 | A0A0A7RI71_BRAOC; WRKY22 protein | ||||
STRING | Bo3g031650.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37260.1 | 0.0 | WRKY family protein |