PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626698.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 438aa    MW: 48178.9 Da    PI: 9.7432
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626698.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30173229360
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     DgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkvers   + v ei+Y+geHnh+k
  XP_013626698.1 173 DGYNWRKYGQKQVKGSDCPRSYYKCTHPKCPVKKKVERSM-GGLVSEIVYQGEHNHSK 229
                     9***************************************.9**************85 PP
2WRKY102.81.9e-32358415259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+v g+ +prsYYrCtsa+C+++k+ver+++dp+++++tYeg+Hnh+
  XP_013626698.1 358 EDGFRWRKYGQKVVGGNAHPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHH 415
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-26168230IPR003657WRKY domain
SMARTSM007743.4E-32171229IPR003657WRKY domain
SuperFamilySSF1182908.24E-24172230IPR003657WRKY domain
PROSITE profilePS5081122.481173230IPR003657WRKY domain
PfamPF031066.1E-24173227IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-32346415IPR003657WRKY domain
PROSITE profilePS5081131.709352417IPR003657WRKY domain
SuperFamilySSF1182903.4E-27352415IPR003657WRKY domain
SMARTSM007742.4E-38357416IPR003657WRKY domain
PfamPF031065.4E-26358415IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MLGIGVSHRP ICLRLTTIME VKESKRVVIA KPVASRPSFT SIRTFANLLT DSVTVPPHET  60
VDAAIRPKTL RFKQPAAASV SCPQVEGIDK GKSCDDSDTK SYVVYKPKAK LVSQATVSAL  120
ANMLQGNHQQ VWRQSESVPY GKSVSQGTRP NLVPRVPSFK ESETSAGDRS SVDGYNWRKY  180
GQKQVKGSDC PRSYYKCTHP KCPVKKKVER SMGGLVSEIV YQGEHNHSKP SCPLPRCASS  240
SSSSGFQRPQ RELASEGSIG QDPSNVYYHP LWSNQSNDSS KSIAEKMNEG CVITPFEFAV  300
PRSANSTGGT SDSGCRSCSQ CDEGELDDPS RSKRSRKNEK QASQTGVSQS SVDSDSLEDG  360
FRWRKYGQKV VGGNAHPRSY YRCTSANCRA RKHVERASDD PRAFITTYEG KHNHHLNLRP  420
PTSPTLPFTS TQHSNQAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-27173416978Probable WRKY transcription factor 4
2lex_A3e-27173416978Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626698.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931370.0KM593137.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626698.10.0PREDICTED: WRKY transcription factor 44-like isoform X1
SwissprotQ9ZUU00.0WRK44_ARATH; WRKY transcription factor 44
TrEMBLA0A3P6A6X70.0A0A3P6A6X7_BRAOL; Uncharacterized protein
STRINGBo3g031650.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83622740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.10.0WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]