PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013626604.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LSD

Protein Properties

Length: 153aa MW: 16856.3 Da PI: 4.6936

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013626604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.4	1.2e-13	65	89	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrG ++V+C++C+tV XP_013626604.1 65 CGSCRRLLSYPRGTKHVKCSCCQTV 89 ************************9 PP
2	zf-LSD1	43.7	4.6e-14	103	127	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C++C lL+YP+GApsVRC++C V XP_013626604.1 103 CSNCELLLMYPYGAPSVRCSSCKSV 127 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	5.1E-18	62	92	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.7E-11	65	89	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	6.9E-11	100	128	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	9.7E-12	103	127	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MIAEAETKDM MEEIQSQKKE EDEDEEEGPP PGWESTVLPP PPSPPISAVT TATAAEISEM 60 AQMVCGSCRR LLSYPRGTKH VKCSCCQTVN LVLEAYQVGQ VKCSNCELLL MYPYGAPSVR 120 CSSCKSVTDI REDNKRPPWS VLQGPLKTFS SVR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013626604.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013626604.1	1e-109	PREDICTED: protein LOL2
Swissprot	O65426	4e-63	LOL2_ARATH; Protein LOL2
TrEMBL	A0A0D3BKP9	1e-107	A0A0D3BKP9_BRAOL; Uncharacterized protein
STRING	Bo3g162470.1	1e-108	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13611	22	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-55	lsd one like 2