PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013626512.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 261aa MW: 29225.6 Da PI: 5.6835 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.6 | 9.7e-32 | 71 | 129 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ XP_013626512.1 71 SDSWAWRKYGQKPIKGSPYPRGYYRCSSTkGCPARKQVERSRDDPTMIIITYTSEHNHP 129 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.6E-33 | 63 | 131 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.604 | 65 | 131 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.16E-27 | 66 | 131 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-38 | 70 | 130 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-27 | 72 | 129 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MKRGLDMARS YNDHESSQET GPESPNSPTF NSVISSHSPK RSRRSMEKRV VNVPMKEIEG 60 SRHKGDTTPP SDSWAWRKYG QKPIKGSPYP RGYYRCSSTK GCPARKQVER SRDDPTMIII 120 TYTSEHNHPW PLSSSSRHGP KPKPEPKPEP ELEVPEEVEL EEAGNSKLMV MGREIETTPS 180 CIVDEFAWFS EMETTSSTIL ESPIFSSEKK TAVSAAANDV GVFFPMGEED ESLFADLGEL 240 PESSVVFRHR SSVVGSQVEI F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-21 | 48 | 131 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 2e-21 | 48 | 131 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013626512.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU912411 | 0.0 | EU912411.1 Brassica napus WRKY65-1 transcription factor (WRKY65-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626512.1 | 0.0 | PREDICTED: probable WRKY transcription factor 65 | ||||
Swissprot | Q9LP56 | 1e-151 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A0D3BIT0 | 0.0 | A0A0D3BIT0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BQ35 | 0.0 | A0A3P6BQ35_BRAOL; Uncharacterized protein | ||||
TrEMBL | C4N0X5 | 0.0 | C4N0X5_BRANA; WRKY65-1 transcription factor | ||||
STRING | Bo3g143900.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5383 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 1e-141 | WRKY DNA-binding protein 65 |
Publications ? help Back to Top | |||
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