PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013626097.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 294aa MW: 33737.5 Da PI: 7.2858 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7.3e-05 | 170 | 192 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ Cgk+F++ L H +H XP_013626097.1 170 FKCETCGKVFNSYQALGGHRASH 192 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00039 | 218 | 240 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F++ L H r+H XP_013626097.1 218 HQCPICFRVFTSGQALGGHKRSH 240 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 1.9 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.245 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.35E-8 | 5 | 26 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.012 | 6 | 27 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.35E-8 | 165 | 192 | No hit | No description |
Pfam | PF13912 | 9.3E-12 | 169 | 194 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 170 | 192 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 170 | 198 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.739 | 170 | 197 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 172 | 192 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.97E-5 | 215 | 243 | No hit | No description |
Pfam | PF13912 | 1.7E-10 | 217 | 240 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.08 | 218 | 240 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.369 | 218 | 245 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 220 | 240 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MERNKCRFCF KSFLNGRALG GHMRSHMLTL PSKRELYELT ERPSQLSEET ESDAWSWGEF 60 ESETESSRMN PTRKRTKRTR KLGSFDFDDF KKVRTSQPGC EVGTEPEHHS SASDTTTEED 120 LALCLIMLSR DKWKQQKNKT IVVEEEEETD HEREDYKPSK NRGGRGRGRF KCETCGKVFN 180 SYQALGGHRA SHKKNKTFTT MTSSTKTEHD KIECEKVHQC PICFRVFTSG QALGGHKRSH 240 GSNNVGSRRE LSVNQSVPSV KEEEEEVSVK QTMIDLNLPA PNEDDETSVV FNEW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013626097.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189399 | 0.0 | AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626096.1 | 0.0 | PREDICTED: zinc finger protein ZAT4-like | ||||
Refseq | XP_013626097.1 | 0.0 | PREDICTED: zinc finger protein ZAT4-like | ||||
Swissprot | Q9SHD0 | 1e-115 | ZAT4_ARATH; Zinc finger protein ZAT4 | ||||
TrEMBL | A0A0D3B6T1 | 0.0 | A0A0D3B6T1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6AXK3 | 0.0 | A0A3P6AXK3_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g037560.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 2e-94 | C2H2-like zinc finger protein |