PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013626097.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 294aa    MW: 33737.5 Da    PI: 7.2858
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013626097.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.3e-05170192123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ Cgk+F++   L  H  +H
  XP_013626097.1 170 FKCETCGKVFNSYQALGGHRASH 192
                     89**********99999998887 PP
2zf-C2H212.70.00039218240123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  XP_013626097.1 218 HQCPICFRVFTSGQALGGHKRSH 240
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.9426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245431IPR007087Zinc finger, C2H2
SuperFamilySSF576672.35E-8526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139120.012627IPR007087Zinc finger, C2H2
SuperFamilySSF576672.35E-8165192No hitNo description
PfamPF139129.3E-12169194IPR007087Zinc finger, C2H2
SMARTSM003550.015170192IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001170198IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.739170197IPR007087Zinc finger, C2H2
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
SuperFamilySSF576675.97E-5215243No hitNo description
PfamPF139121.7E-10217240IPR007087Zinc finger, C2H2
SMARTSM003550.08218240IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369218245IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MERNKCRFCF KSFLNGRALG GHMRSHMLTL PSKRELYELT ERPSQLSEET ESDAWSWGEF  60
ESETESSRMN PTRKRTKRTR KLGSFDFDDF KKVRTSQPGC EVGTEPEHHS SASDTTTEED  120
LALCLIMLSR DKWKQQKNKT IVVEEEEETD HEREDYKPSK NRGGRGRGRF KCETCGKVFN  180
SYQALGGHRA SHKKNKTFTT MTSSTKTEHD KIECEKVHQC PICFRVFTSG QALGGHKRSH  240
GSNNVGSRRE LSVNQSVPSV KEEEEEVSVK QTMIDLNLPA PNEDDETSVV FNEW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013626097.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893990.0AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626096.10.0PREDICTED: zinc finger protein ZAT4-like
RefseqXP_013626097.10.0PREDICTED: zinc finger protein ZAT4-like
SwissprotQ9SHD01e-115ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLA0A0D3B6T10.0A0A0D3B6T1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AXK30.0A0A3P6AXK3_BRAOL; Uncharacterized protein
STRINGBo3g037560.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-94C2H2-like zinc finger protein