PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625967.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HRT-like
Protein Properties Length: 590aa    MW: 66324.1 Da    PI: 10.0864
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like50.63.2e-16396426131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     +CGv+ edG++C + P+ gRKRC +HKG+Ri
  XP_013625967.1 396 VCGVLQEDGTTCLTAPATGRKRCTQHKGQRI 426
                     7*****************************7 PP
2HRT-like44.32.9e-14444474131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     iCGvil     C+ +Pv gRKRCe HKGmR+
  XP_013625967.1 444 ICGVILPEMVRCRSKPVSGRKRCEDHKGMRV 474
                     8*****************************7 PP
3HRT-like26.88.7e-09515541228
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                     C +++++G +C+r++ kg  RC++HK+
  XP_013625967.1 515 CEATTKNGLPCTRSAPKGTRRCWQHKD 541
                     99************************7 PP
4HRT-like58.51.1e-18558588131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     +CGv+l  GsvC+++PvkgRKRC+eHKGmRi
  XP_013625967.1 558 VCGVKLYTGSVCEKPPVKGRKRCQEHKGMRI 588
                     7*****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF143038.4E-951141IPR029466No apical meristem-associated, C-terminal domain
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MHCKQRWQKI NDLVCKFCGS YEAATRKKTS GQNETDVLKR AHEIFYNNYK KKFTLEHAWI  60
ELRNEQKWCD LSSSKQDGSS KKRKLDDGAQ SSTSHATESK TSEADEGTNR PLGVKASKGR  120
GKKTTFEGTG LSEFQTMWSI KQQDLHPNNH LLTLSSSILQ WPREFQNLKK KKKKTSVKFS  180
IPIRSVTGDA ASLTVVVTMY KRDDYVRNKP DGVFSKWQGF ARSMLLPKPF SETAELRRTV  240
ADYSLISRDL APKILTGAKG NREDLRVGKD FVGRYRVQES IQGLGVAVNI HDADDISHGQ  300
TESIRTRLRS YGRPVPLLKK LGDNASQTIT QKKTGSRSND KKHGFEEERD VSRVEAEENN  360
TNSVHASSVL RLSRPRPQPV LERHDDIVDG SDSASVCGVL QEDGTTCLTA PATGRKRCTQ  420
HKGQRITCAP PVKKPPCEEE TEEICGVILP EMVRCRSKPV SGRKRCEDHK GMRVNAFFFL  480
LNPTERDKIL KEDKSKPETR TSSTNQEEPG QSLSCEATTK NGLPCTRSAP KGTRRCWQHK  540
DEALDHKSSE NVKSTTVVCG VKLYTGSVCE KPPVKGRKRC QEHKGMRITS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that negatively modulates gibberellin-mediated developmental processes. May act as transcriptional repressor of giberellin controlled genes. Binds DNA without sequence preference. {ECO:0000269|PubMed:16244914}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625967.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5335060.0AY533506.1 Brassica napus effector of transcription mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625967.10.0PREDICTED: uncharacterized protein LOC106332051
SwissprotA2RQG70.0ET_BRANA; Protein EFFECTOR OF TRANSCRIPTION
TrEMBLA0A3N6QBK70.0A0A3N6QBK7_BRACR; Uncharacterized protein
STRINGBra026458.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29542763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26170.11e-122