PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013625934.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 471aa MW: 51818.6 Da PI: 5.0416 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.6 | 3.1e-11 | 43 | 68 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff+rtG+C yG++C+++H+ XP_013625934.1 43 PGERDCQFFLRTGQCGYGNSCRYNHP 68 5789*********************9 PP | |||||||
2 | zf-CCCH | 36.4 | 9.1e-12 | 89 | 113 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tG CkyG++Ck++H++ XP_013625934.1 89 QPDCEYYLKTGACKYGSTCKYHHPK 113 789********************96 PP | |||||||
3 | zf-CCCH | 33.7 | 6.2e-11 | 134 | 157 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+++++tG Ck+G CkF+H+ XP_013625934.1 134 EKSCPYYMQTGMCKFGVACKFHHP 157 667********************8 PP | |||||||
4 | zf-CCCH | 39.9 | 7.1e-13 | 234 | 258 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++Crff+ tGtCkyGd Ck++H++ XP_013625934.1 234 RAECRFFMNTGTCKYGDDCKYSHPK 258 799********************96 PP | |||||||
5 | zf-CCCH | 30.5 | 6.3e-10 | 279 | 304 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +f ++G+CkyG++Ck+ H+ XP_013625934.1 279 PGQPACGNFKAYGFCKYGPNCKYDHP 304 57899********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.896 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-9 | 44 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.11E-5 | 46 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 48 | 67 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.802 | 86 | 114 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-6 | 86 | 113 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-9 | 89 | 113 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-6 | 91 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 92 | 112 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-6 | 130 | 159 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.77 | 131 | 159 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-5 | 131 | 158 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.0E-8 | 133 | 157 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 136 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.671 | 231 | 259 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-8 | 232 | 258 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-10 | 234 | 258 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-7 | 234 | 260 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-7 | 237 | 259 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 277 | 303 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.164 | 278 | 306 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 278 | 305 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-7 | 280 | 304 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MSETQNSTES VRSSDKIEDT LTRVKVNEEN MEQSSPSPYP DRPGERDCQF FLRTGQCGYG 60 NSCRYNHPLS LVPQAVLYQR DELPERIGQP DCEYYLKTGA CKYGSTCKYH HPKDRNGAEP 120 VLFNVLGYPM RQGEKSCPYY MQTGMCKFGV ACKFHHPHPQ PHNGQSTTHG MSSFPYSMMS 180 LPPATYGVMP PPQVPHPQAY MPFMFAPPQG WSPYMAGSNP IYNVKTQPDS SSERAECRFF 240 MNTGTCKYGD DCKYSHPKER MLQSPPNLSH HIVLLPARPG QPACGNFKAY GFCKYGPNCK 300 YDHPSSPVST QPRSSTPPSR SDSTAISNGD KPGSENNSSE VEKQDEDISD KSEVQESSQL 360 SGSDSTAISN GDKPAADNHS SEVEKHDDSS DKTEVQGSSQ LSGSESTVIA NGNKPTAESH 420 SSEIEKQDED ISDKSEVQDC DSTALSNGKT DAESPSSETE KQEDNGSQPD N |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013625934.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625934.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 26-like | ||||
Swissprot | O48772 | 0.0 | C3H26_ARATH; Zinc finger CCCH domain-containing protein 26 | ||||
TrEMBL | A0A3P6AMJ9 | 0.0 | A0A3P6AMJ9_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g027010.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2380 | 26 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32930.1 | 0.0 | zinc finger nuclease 2 |