PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625932.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 455aa    MW: 50174 Da    PI: 6.1951
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625932.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.33.8e-36271192103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ ++e++sws+ +nsfvv++  efak+ LpkyFkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F +g+k+ll++
  XP_013625932.1  27 FLSKTYDMVDDPLTDEVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKIDPER---------WEFANEGFVRGQKHLLKS 112
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k +
  XP_013625932.1 113 INRRKPS 119
                     ****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-3820111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-5823116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.54E-3423116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.6E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MRSICESVPA ANSSSASTTV VSSIPPFLSK TYDMVDDPLT DEVVSWSSGN NSFVVWNVPE  60
FAKQFLPKYF KHNNFSSFVR QLNTYGFRKI DPERWEFANE GFVRGQKHLL KSINRRKPSQ  120
VQPQKQPQVQ HSSVGACVEV GKFGLEEEVE RLQRDKNVLM QELVRLRQQQ QGTEHHLQNV  180
GQKVHVMEQR QQQMMSFLAK AVQSPGFLNQ FSQQSSEGNQ HISESNKKRR LPVENQKGSG  240
SHGVNGLSRQ IVRYQSSMNE SANSVLQQIQ SMSSSRGCHE PLSNNHGSFL LGDVPNLSAN  300
GSSSNGASGV AFSDVSSNAA MKHHDPYAQA DLLAPRQGAV VASGSSSSDL VGCETDNGEC  360
LDPMMAVLDE SMMLGSDGAI NELLPGAGDS LWEQFFGESP GIGITDELVS GSVDNELIME  420
QLELQRNLRN MLGKNQQMNH LTEQMGLLSS DVLRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-262211624129Heat shock factor protein 1
5d5v_B1e-262211624129Heat shock factor protein 1
5d5v_D1e-262211624129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625932.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891850.0AC189185.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB001H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625932.10.0PREDICTED: heat stress transcription factor A-1e-like
RefseqXP_013745019.10.0heat stress transcription factor A-1e-like
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLA0A0D3B9H90.0A0A0D3B9H9_BRAOL; Uncharacterized protein
STRINGBo3g055950.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]