PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625919.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family E2F/DP
Protein Properties Length: 285aa    MW: 32430 Da    PI: 8.3342
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.98.3e-2451133371
         E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     + +Lr+++ +   +++k e+ +i+t++eva+e++s+                 ++kn+rRR+YD+lNV++al++i++ +k+eirwkg
  XP_013625919.1  51 GGGLRQFSVM---VCQKLEAkKITTYKEVADEIISDfatikqnaekplneneyNEKNIRRRVYDALNVFMALDIIAR-DKKEIRWKG 133
                     5799999999...****9999********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094049.7E-944280IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.0E-3546136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-2849133IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.2E-2052133IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.29E-1852134IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.26E-25140241IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.8E-33140266No hitNo description
SMARTSM011384.0E-39140285IPR014889Transcription factor DP, C-terminal
PfamPF087819.8E-30141259IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEMDLIVTPE KQRNRHAVRL VKTPVRRKLI ADDDDDHEIG TEKKGQSRTA GGGLRQFSVM  60
VCQKLEAKKI TTYKEVADEI ISDFATIKQN AEKPLNENEY NEKNIRRRVY DALNVFMALD  120
IIARDKKEIR WKGLPIICKK DVEEVKRDRN KVMNSVQKKA VFLKELREKV SSLESLMLRN  180
QEMAVKTEGP AEGFNLPLIL LETNPHAAVE IEISEDMQLV HLDFNSTPFS VHDDAYILKL  240
MQEHKLQQNR ASSSSSTHHQ SQHSSSSSCI ASGTSGPVCW NSRSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2551135990PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Low expression at the G1/S transition and increases during the S phase. S/G2 transitions. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Strongly expressed in the actively dividing tissues of the shoot apical meristem, young leaf primordia, the vascular tissues of the maturing leaf primordia and axillary buds. {ECO:0000269|PubMed:11889041}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625919.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625919.10.0PREDICTED: transcription factor-like protein DPA
SwissprotQ9FNY31e-172DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A0D3AZF50.0A0A0D3AZF5_BRAOL; Uncharacterized protein
STRINGBo3g001900.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116412233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.31e-172Transcription factor DP