PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625825.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 269aa    MW: 30497.8 Da    PI: 4.4692
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625825.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.5e-09213266145
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwq 45 
                      r+ WT+eE+e l  +vk++ ++      W++I ++ +     +Rt+ ++k++w+
   XP_013625825.1 213 RLLWTPEEEEMLRMGVKKFAPEankniPWRKILEMGQtvfqPTRTPADLKDKWR 266
                      677*****************99***********9999****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.317208269IPR017877Myb-like domain
SuperFamilySSF466896.13E-9212267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-9213267IPR009057Homeodomain-like
PfamPF002491.7E-6215267IPR001005SANT/Myb domain
CDDcd116602.27E-9216266No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MKTKSFPERF GSIETDPDTV RPLKKRQCPL GEDKPLKSDD ACIVCEVSEE GASSCCGVDC  60
LLRFHEECLT PEFGGSEDLS NPLCPYCWFR VVALKSKSLR EEAVSAENAV YKYLDKDTVS  120
GQGLQGGDRA ECSSSKEDQF DNSSHQPEEG TDMEEEDKVI EDEVEASAED GERVDADHDE  180
SAQVQTNEEH VSEHVASQPN TLRAFSFFNK NRRLLWTPEE EEMLRMGVKK FAPEANKNIP  240
WRKILEMGQT VFQPTRTPAD LKDKWRRQH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625825.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625825.10.0PREDICTED: uncharacterized protein LOC106331933
RefseqXP_013625827.10.0PREDICTED: uncharacterized protein LOC106331933
TrEMBLA0A0D3AZI10.0A0A0D3AZI1_BRAOL; Uncharacterized protein
STRINGBo3g002160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-06MYB_related family protein