PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625566.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 378aa    MW: 42346 Da    PI: 7.2189
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625566.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.47.8e-30154211260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +Dgy WrKYGqK+vk+s++prsY++Ct+++C +kk ve+++ d++++ei+Y+g Hnh+k
  XP_013625566.1 154 NDGYGWRKYGQKQVKKSKNPRSYFKCTYPNCVSKKIVETAS-DGQITEIIYKGGHNHPK 211
                     8***************************************9.***************85 PP
2WRKY102.91.8e-32313370259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK+vkg+++prsYY+Ct++gC v+k++ersaed+++v +tYeg+Hnh+
  XP_013625566.1 313 VDGFRWRKYGQKVVKGNTNPRSYYKCTFQGCGVRKQIERSAEDERAVLTTYEGRHNHD 370
                     5********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-25141212IPR003657WRKY domain
SuperFamilySSF1182903.66E-23150212IPR003657WRKY domain
SMARTSM007742.2E-30153211IPR003657WRKY domain
PROSITE profilePS5081120.346154212IPR003657WRKY domain
PfamPF031061.6E-22154210IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-33297372IPR003657WRKY domain
SuperFamilySSF1182908.24E-28304372IPR003657WRKY domain
PROSITE profilePS5081133.878307372IPR003657WRKY domain
SMARTSM007741.7E-36312371IPR003657WRKY domain
PfamPF031066.1E-25314370IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSSTSFTDLL ASSGVDFYEE DEDFLCGFSP ERTGSGLPKF KTAQPPPLPI SQSFAFSDLL  60
DSPLLLSSSH SLISPTTGAF PFQGFNGTNN HSDIPWQLQP QTQPSNASSA LQETYAVQDL  120
PKKKDPVPRE FAAHSLGSDR QVKVPSYMVS KNSNDGYGWR KYGQKQVKKS KNPRSYFKCT  180
YPNCVSKKIV ETASDGQITE IIYKGGHNHP KPEFTKRPSG SASANARRMF NPSSVVSDTH  240
DQSENSSISF DYSDLEQKSF KSEYGEIDEE EEQPEMKRLK REGEDEGMSI EVSRGVKEPK  300
VVVQTISDID VLVDGFRWRK YGQKVVKGNT NPRSYYKCTF QGCGVRKQIE RSAEDERAVL  360
TTYEGRHNHD IPTALRRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-32154372877Probable WRKY transcription factor 4
2lex_A2e-32154372877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves, stems and seeds. {ECO:0000269|PubMed:18839316}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00282DAPTransfer from AT2G30250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625566.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931660.0KM593166.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY140) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625566.10.0PREDICTED: probable WRKY transcription factor 25
RefseqXP_013683270.10.0probable WRKY transcription factor 25
SwissprotO229210.0WRK25_ARATH; Probable WRKY transcription factor 25
TrEMBLA0A078GFW60.0A0A078GFW6_BRANA; BnaC03g16740D protein
TrEMBLA0A0D3B4660.0A0A0D3B466_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AWN40.0A0A3P6AWN4_BRAOL; Uncharacterized protein
STRINGBo3g024450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116031733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.10.0WRKY DNA-binding protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]