PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625473.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 352aa    MW: 39062.8 Da    PI: 7.6267
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625473.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-076893127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ykt+ C  f   G C+ G+ C+FaHg+
  XP_013625473.1 68 YKTRMCVKFKS-GACRNGELCNFAHGM 93
                    89999**9999.*************95 PP
2zf-CCCH18.73.1e-061561701125
                     GTS.--TTTTT-SS-S CS
         zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                       G +C+yGdrC+F+H
  XP_013625473.1 156 F-GeECPYGDRCNFIH 170
                     5.449*********** PP
3zf-CCCH37.93e-12235260127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC  f + G+C++Gd+C+FaHg+
  XP_013625473.1 235 WKTRLCGKFEK-GQCPFGDNCHFAHGQ 260
                     8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-1465100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-86698IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-46793IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4366794IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-46893IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036145172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6145171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.455145173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-8147171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8232263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-14232263IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-7234260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.713234261IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-10235260IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDSSYSDSRP YGVWNQTQMV DSMNNDQSDS QTMPQLKRPR LVDDNNTSWN VPSSNAPPVN  60
KGTANIFYKT RMCVKFKSGA CRNGELCNFA HGMEDLRQPP SNWQEIVGPP VQDREKERER  120
ERLSSFSGGN NSNNGGNWED DQKIILRMKL CRKFCFGEEC PYGDRCNFIH EDLSKFREEN  180
GKLRESLAIS VVDPLSVENG VAASHQVEVV RQGGVPAPVS APLNNGVGGV KTVFWKTRLC  240
GKFEKGQCPF GDNCHFAHGQ AELLQHSVGR VEGEAMNAVA ASVSKPMVVP ANEAFAMKPT  300
AQVTADSSGL NDEGRRKKCL LKWSDSKKIN RIYGDWIDDL PVGQKSTKPV ES
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625473.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625473.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT811e-173C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0D3BC600.0A0A0D3BC60_BRAOL; Uncharacterized protein
STRINGBo3g073180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-173C3H family protein