PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625399.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 377aa    MW: 43579.4 Da    PI: 6.6705
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05113137123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C    C+k F ++s LkrH   H
  XP_013625399.1 113 YVCDypGCDKKFLDSSKLKRHWLIH 137
                     89*******************9988 PP
2zf-C2H220.31.5e-06143167123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C+   Cgk Fs   nL++H++tH
  XP_013625399.1 143 FVCTyqGCGKAFSLDFNLRSHMKTH 167
                     89**********************9 PP
3zf-C2H212.20.00055173198123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     + Cp   Cgk++   + Lk+H    H
  XP_013625399.1 173 HICPysGCGKRYAYEYKLKNHVAAyH 198
                     68*******************87666 PP
4zf-C2H213.50.00022237262123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     y Cp   C+k + + + Lk H+++ H
  XP_013625399.1 237 YACPyeGCDKDYIHEYKLKLHLKReH 262
                     89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-1379110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.53384113IPR007087Zinc finger, C2H2
SMARTSM003550.01384108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086108IPR007087Zinc finger, C2H2
SuperFamilySSF576678.23E-987137No hitNo description
Gene3DG3DSA:3.30.160.601.7E-14111133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.404113142IPR007087Zinc finger, C2H2
SMARTSM003550.0025113137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280115137IPR007087Zinc finger, C2H2
SuperFamilySSF576676.29E-14124179No hitNo description
Gene3DG3DSA:3.30.160.602.9E-19134169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.757143172IPR007087Zinc finger, C2H2
SMARTSM003558.1E-4143167IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280145167IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-7170194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012173198IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280175198IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-8234259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.49E-5235262No hitNo description
SMARTSM003550.013237262IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286237267IPR007087Zinc finger, C2H2
PROSITE patternPS000280239262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEQRYQYQNN PFERRPILKP SKSSPAVRWI KDWVPQDIVA TGAKCYLRKW VTEETVKRLK  60
EKEKEPTTDV SDLDPPEPTS EILFLCSYDG CGKIFFDVSA LRKHSHIHGE RQYVCDYPGC  120
DKKFLDSSKL KRHWLIHTGA RDFVCTYQGC GKAFSLDFNL RSHMKTHSQE NYHICPYSGC  180
GKRYAYEYKL KNHVAAYHEK NGAGETPTFT PPAEKASRTP RTSSATVYGS ASLERPYACP  240
YEGCDKDYIH EYKLKLHLKR EHLPEENNNT PNKHDLEEGS DQDFYRKLAS NGKIQMHKQQ  300
SRAKPDMRTP PAKALKKGST SSPAKARMDK KPLQEKETCE GEDSEETEED RENVDDGWRF  360
VGNNEEEDDD EETEDEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-35861978117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625399.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411880.0AC241188.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH120G08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625399.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
SwissprotQ2V3L31e-178YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A0D3B4060.0A0A0D3B406_BRAOL; Uncharacterized protein
STRINGBo3g023850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-176C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]