PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625316.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 371aa    MW: 41456.6 Da    PI: 7.7538
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625316.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.5e-103460127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ r G C++G++C+F+H++
  XP_013625316.1 34 PGEPDCSYYIRAGLCRFGSTCRFNHPR 60
                    5789*********************96 PP
2zf-CCCH35.61.6e-1181105327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C ++++tGtC +G +CkF+H++
  XP_013625316.1  81 QPECEYYLKTGTCTFGVTCKFHHPR 105
                     799********************96 PP
3zf-CCCH37.54e-12127150427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     + C +f+rtG+Ck+G++CkF+H++
  XP_013625316.1 127 VDCAYFLRTGHCKFGATCKFNHPQ 150
                     78********************97 PP
4zf-CCCH34.43.8e-11250276127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f++ tG Ck+G  CkF+H++
  XP_013625316.1 250 PGQPECQFYMNTGDCKFGTVCKFHHPR 276
                     5789*********************96 PP
5zf-CCCH29.51.2e-09297322227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C f++r+G+Ck+G +CkF+H++
  XP_013625316.1 297 GEPSCVFYSRYGICKFGRSCKFHHPM 322
                     7889********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-43360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6993361IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-73560IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-53861IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.84578106IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-578105IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-981105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-682107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-484105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774123151IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-6123150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6124152IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-10127150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4129149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.967249277IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-5249276IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7251276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5253279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4255277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.474295323IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-5295322IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6297322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5300322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSSLSPLMIN QEAMWQMNMT SDETMEPGAY PERPGEPDCS YYIRAGLCRF GSTCRFNHPR  60
DRELVIATAR MRGEYSERIG QPECEYYLKT GTCTFGVTCK FHHPRNKAGI AGRVSLNMLG  120
YPLRNEVDCA YFLRTGHCKF GATCKFNHPQ PQPTTNLMVP TSGQQQSYPW SRASFIPTPR  180
WQDTSGFTAL MMPQGVIWNP YTGQLGSVSP SGTGNDHNNY RKLQQNESGS SVPQGGIYAL  240
PSESVFPERP GQPECQFYMN TGDCKFGTVC KFHHPRDRQT PPPDCLLSPI GLPLLPGEPS  300
CVFYSRYGIC KFGRSCKFHH PMGVFTYDNT ASETDEVVET ATGHSRRLSV SETRQAATTS  360
GQDTTIDTTH R
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625316.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1179780.0AK117978.1 Arabidopsis thaliana At3g02830 mRNA for putative zinc finger protein 1 (zfn1), complete cds, clone: RAFL19-18-D10.
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625316.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A0D3B9H00.0A0A0D3B9H0_BRAOL; Uncharacterized protein
STRINGBo3g055860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]