PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013625311.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 425aa    MW: 46398 Da    PI: 10.034
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013625311.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.74e-1586173186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ + +Li+a  e+  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk++k +  ++  + +s++++fd+l+
  XP_013625311.1  86 CWSEKATAVLIDAWGERYMELSRGNLKQKHWREVAEIVsgmeDYGKTAKTDIQCKNRIDTVKKKYKQEKVRIASG--GGRSRWVFFDKLD 173
                     7*************************************99877788899************************97..56668******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-2484175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MEDEEEIRSR ASSSPDPSPS PPPGGVTVTV ASTGPPSYSL TPPSSSSQQQ RDPNALALAL  60
LPSGGGGGGG SSSNGRASGG GGREDCWSEK ATAVLIDAWG ERYMELSRGN LKQKHWREVA  120
EIVSGMEDYG KTAKTDIQCK NRIDTVKKKY KQEKVRIASG GGRSRWVFFD KLDRLIGSTA  180
KIPAIGSPGG GLNKIPMGIP MDSRSNVYHQ QVKAPPFNNL DRLIGATARV TASSFGGGGG  240
GGNVPMGIPM SSRSSPFGQQ GRTLPQQQQV RTLPQQQQGM MMVKRCSESK RWRFSKRNAT  300
DSDSEESDAA PMSDDDSGDS LPPPPLSKRT KQGGNKWREL SRAIMRFGEA YEQTENAKLQ  360
QVVEMEKERM KFLKEMELQR MQFFVKTQLE ISEIKEQGRR MGNTSNDHHK SKNNMNEIVS  420
NDVGN
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013625311.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625311.10.0PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG80.0ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0D3BB810.0A0A0D3BB81_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B6W90.0A0A3P6B6W9_BRAOL; Uncharacterized protein
STRINGBo3g065930.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-168sequence-specific DNA binding transcription factors