PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013625135.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 25855.4 Da PI: 5.0361 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.8 | 2.3e-17 | 74 | 123 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 y+GVr ++ +g+++AeIrd + ng r++lg+f+ aeeAa a+++a+ + + XP_013625135.1 74 SYRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAYATK 123 69*******.**********44465..*********************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.06E-28 | 73 | 133 | No hit | No description |
SMART | SM00380 | 1.2E-34 | 74 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.865 | 74 | 132 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-21 | 74 | 134 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-29 | 74 | 133 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-11 | 74 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MYSSSSSWSS SQESFLWNES SFLDQSFFCP AHNYSDDFFS FESPEMMIKE ETQNDDVSNS 60 EGEEKIGTVD EEKSYRGVRK RPWGKFAAEI RDSTRNGIRV WLGTFDKAEE AALAYDQAAY 120 ATKGSLAVLN FPVEVVKESL KKMESVNLED GGSPVMALKR KHSLRNRPRG KKRSSNSSSA 180 SSCNSCSYSS SSSSSSSSSR SNKQSVVKQE SGTLVVFEDL GAEYLEQLLM SSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-27 | 67 | 134 | 7 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bol.15301 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013625135.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189433 | 0.0 | AC189433.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013625135.1 | 1e-169 | PREDICTED: ethylene-responsive transcription factor 15-like | ||||
Swissprot | Q8VYM0 | 1e-121 | ERF93_ARATH; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A078GEX8 | 1e-168 | A0A078GEX8_BRANA; BnaC03g17400D protein | ||||
TrEMBL | A0A0D3B4D2 | 1e-168 | A0A0D3B4D2_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6AMV5 | 1e-168 | A0A3P6AMV5_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g025110.1 | 1e-169 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3990 | 18 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 1e-106 | ethylene-responsive element binding factor 15 |
Publications ? help Back to Top | |||
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