PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013624920.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 369aa    MW: 41819.5 Da    PI: 9.4289
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013624920.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.9e-1723951594
                    -EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3 15 rlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                     + +p  f+++h +   +++kt +l++  s  +Wev +  ++++    lt+GWkeFvka++L++gD++vF+++g+  f  +v
  XP_013624920.1 23 HMNIPVAFFSKHvQ-GRHGDKTARLRSdASDTTWEVVI--TGRR----LTGGWKEFVKAHDLRVGDVLVFRHEGELVF--HV 95
                    489*********64.456889****997888*******..8888....***********************7664333..44 PP
2B349.29.3e-16147236498
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + ++ ++l ++ +++p +f++ +g++++   +++l +e grsW++ l ++k+  + +l++GW++F++an ++ g   +Fkl++ +++++v+++++
  XP_013624920.1 147 ANVTVSSLHEDKVYIPVSFVRPNGLSNTY-CKIVLLNEMGRSWKLSLVHDKS--GSYLRQGWRSFCSANAINGGRY-TFKLVQ-NSETPVIRLYQ 236
                     556778889999***********998655.59***************55544..4679**************9985.****99.55558888776 PP
3B366.15.2e-21253343698
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++++l+++ l+l+++f++++g+k+++  +++l++ +g +W + l+ + + +++v+++GW++F++angLk++D + Fkl g +++++v++++ 
  XP_013624920.1 253 LTPSSLRNDTLYLSRRFVNSNGLKEKC-CEMILKNDNGGTWCLVLRRNETNETTVISRGWRSFCHANGLKVRDPFRFKLAG-TREKPVLQFCP 343
                     4788999999************99766.5****************98888889**************************98.77778999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-228103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-209107IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-171296No hitNo description
SMARTSM010199.6E-2114101IPR003340B3 DNA binding domain
PfamPF023626.8E-122394IPR003340B3 DNA binding domain
PROSITE profilePS5086311.74424101IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-17143232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-15143232IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.125144238IPR003340B3 DNA binding domain
CDDcd100172.78E-10144235No hitNo description
SMARTSM010193.2E-21145238IPR003340B3 DNA binding domain
PfamPF023621.8E-14146236IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-19244344IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-21245348IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.507248344IPR003340B3 DNA binding domain
SMARTSM010196.5E-26249345IPR003340B3 DNA binding domain
CDDcd100173.13E-19252343No hitNo description
PfamPF023621.5E-19252343IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MADTVLQSPT NPHFFQPILP GSHMNIPVAF FSKHVQGRHG DKTARLRSDA SDTTWEVVIT  60
GRRLTGGWKE FVKAHDLRVG DVLVFRHEGE LVFHVTALGS SCCEVEYTTL DDGDDNKETV  120
LPSDIKPMKK RAKKNPRKKD FCSCFVANVT VSSLHEDKVY IPVSFVRPNG LSNTYCKIVL  180
LNEMGRSWKL SLVHDKSGSY LRQGWRSFCS ANAINGGRYT FKLVQNSETP VIRLYQAEHR  240
HEDNTHSYLV GTLTPSSLRN DTLYLSRRFV NSNGLKEKCC EMILKNDNGG TWCLVLRRNE  300
TNETTVISRG WRSFCHANGL KVRDPFRFKL AGTREKPVLQ FCPSESNRNT RHVDCSEEAS  360
TMASTKQGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013624920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624920.10.0PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP31e-118REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A078HRD80.0A0A078HRD8_BRANA; BnaC03g67480D protein
TrEMBLA0A0D3BLY20.0A0A0D3BLY2_BRAOL; Uncharacterized protein
STRINGBo3g173740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-116B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]