PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013624565.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 260aa MW: 29260.3 Da PI: 6.8762 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.6 | 1.2e-11 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i++ s r+ t+ R++g+lKK E+ +LCd++++ +i+s+ XP_013624565.1 11 ISDVSARKRTLNLRKKGLLKKLDEIKTLCDVDACAVIYSPY 51 89999**********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.638 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-15 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-19 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-11 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MTRKKTNLAY ISDVSARKRT LNLRKKGLLK KLDEIKTLCD VDACAVIYSP YNPTPEVWPS 60 NSEVQKVMDK FENLPEEKQT KRSFNHEEFL NQTITKVQNQ VKKLIEGNND KLMEELMFSC 120 LNGNMGDLAI DDSNRGNLCE FIDGHLKKLY HHKNVFLKNT HLETGESSSL AMAMGMPPVA 180 MAEAGSSFFN SPQQTNESQP LVTSNQGQEH ISSHGNQFLN VPTFNFPQQP NEVKGTVSLN 240 QGLEQVISSQ LATMELILKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013624565.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013624565.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL80 isoform X4 | ||||
TrEMBL | A0A0D3AFE7 | 0.0 | A0A0D3AFE7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GH14 | 0.0 | A0A3P6GH14_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g150260.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28700.1 | 3e-61 | AGAMOUS-like 46 |