PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013624486.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 319aa MW: 36348.9 Da PI: 6.232 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.1 | 1.7e-11 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i++ s r+ t+ R++g+lKK E+ +LCd++++ +i+s+ XP_013624486.1 11 ISDVSARKRTLNLRKKGLLKKLDEIKTLCDVDACAVIYSPY 51 89999**********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.638 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-15 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-19 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-11 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MTRKKTNLAY ISDVSARKRT LNLRKKGLLK KLDEIKTLCD VDACAVIYSP YNPTPEVWPS 60 NSEVQKVMDK FENLPEEKQT KRSFNHEEFL NQTITKVQNQ VKKLIEGNND KLMEELMFSC 120 LNGNMGDLAI DDSNRGNLCE FIDGHLKKLY HHKNVFLKNT HLETGESSSL AMAMGMPPVA 180 MAEAGSSFFN SPQQTNESQP LVTSNQGQEH ISSHGNQFLN VPTFNFPQQP NEVKGTVSLN 240 QGLEQPIIFS NQGANHVDSL ASNLLPVSNH GVNTQVMNQD EVYYPLNQQD WYVKEMMEPS 300 QPTCFPWMEE NHHYNHRQF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013624486.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013624486.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL80 isoform X2 | ||||
TrEMBL | A0A0D3AFE7 | 0.0 | A0A0D3AFE7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GH14 | 0.0 | A0A3P6GH14_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g150260.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28700.1 | 7e-83 | AGAMOUS-like 46 |