PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013624111.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 328aa    MW: 37554.5 Da    PI: 10.1077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013624111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0016890223
                    EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                    +C+ Cgk F+    L++H  t H
  XP_013624111.1 68 RCGECGKGFRYEKCLRNHSETmH 90
                    7*****************88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.566790IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3466795IPR007087Zinc finger, C2H2
PROSITE patternPS0002806990IPR007087Zinc finger, C2H2
SuperFamilySSF576677.21E-5284312No hitNo description
SMARTSM003550.96286308IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.265286313IPR007087Zinc finger, C2H2
PfamPF139121.9E-6286308IPR007087Zinc finger, C2H2
PROSITE patternPS000280288308IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEDHQEFEKP IFELHNGKVR SSRKKKNRLG ESMNHHYEEI FCYYGLRESS KKRTTQKSLR  60
VKKKRLVRCG ECGKGFRYEK CLRNHSETMH PLKEKKKKSE SMRRDLLCFL RSGGVRRRKR  120
SKRVSRYKKS LPPLSVSSSS SSSSSSSSAF GNDGELLEVA ESLIMLSKSA DALFSNLELN  180
ERECEDGFLG NEQKLVGSLS NELKLVGIRT DSNGTSKELL GFLGDKKVMK EDEVGAESFG  240
EEVRLERVSL DDKKAETDTE QKLGGQEAVF EVSNSASKGF QMNNEHRCRL CERVFTTYQA  300
LGGHQTFHRM KNNSEKSKHE MQRRVSRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15064KKRTTQKSLRVKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013624111.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624111.10.0PREDICTED: uncharacterized protein LOC106330109
RefseqXP_013681543.10.0uncharacterized protein LOC106386211
TrEMBLA0A0D3B9B90.0A0A0D3B9B9_BRAOL; Uncharacterized protein
STRINGBo3g055350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.14e-26C2H2 family protein