PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013624111.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 328aa MW: 37554.5 Da PI: 10.1077 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.001 | 68 | 90 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cgk F+ L++H t H XP_013624111.1 68 RCGECGKGFRYEKCLRNHSETmH 90 7*****************88877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.56 | 67 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.346 | 67 | 95 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 69 | 90 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.21E-5 | 284 | 312 | No hit | No description |
SMART | SM00355 | 0.96 | 286 | 308 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.265 | 286 | 313 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-6 | 286 | 308 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 288 | 308 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MEDHQEFEKP IFELHNGKVR SSRKKKNRLG ESMNHHYEEI FCYYGLRESS KKRTTQKSLR 60 VKKKRLVRCG ECGKGFRYEK CLRNHSETMH PLKEKKKKSE SMRRDLLCFL RSGGVRRRKR 120 SKRVSRYKKS LPPLSVSSSS SSSSSSSSAF GNDGELLEVA ESLIMLSKSA DALFSNLELN 180 ERECEDGFLG NEQKLVGSLS NELKLVGIRT DSNGTSKELL GFLGDKKVMK EDEVGAESFG 240 EEVRLERVSL DDKKAETDTE QKLGGQEAVF EVSNSASKGF QMNNEHRCRL CERVFTTYQA 300 LGGHQTFHRM KNNSEKSKHE MQRRVSRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 64 | KKRTTQKSLRVKKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013624111.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013624111.1 | 0.0 | PREDICTED: uncharacterized protein LOC106330109 | ||||
Refseq | XP_013681543.1 | 0.0 | uncharacterized protein LOC106386211 | ||||
TrEMBL | A0A0D3B9B9 | 0.0 | A0A0D3B9B9_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g055350.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7519 | 16 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15480.1 | 4e-26 | C2H2 family protein |