PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623868.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 399aa    MW: 43843.8 Da    PI: 5.0346
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-05106126323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ C+k F+++  L  H+r H
  XP_013623868.1 106 CSVCHKKFTSRKALYGHMRFH 126
                     *******************99 PP
2zf-C2H211.30.0011261283123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  C+ksF++   L  H  +H
  XP_013623868.1 261 HVCVTCNKSFTSYQALGGHRASH 283
                     79**********99999998887 PP
3zf-C2H214.69.8e-05330352123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C+ksF++   L  H r+H
  XP_013623868.1 330 HVCDICHKSFPTGQALGGHKRRH 352
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.5E-66691IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.25E-967126No hitNo description
PfamPF139129.4E-96991IPR007087Zinc finger, C2H2
SMARTSM003550.16991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.9266996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.014104126IPR007087Zinc finger, C2H2
SMARTSM003550.023104126IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-4106127IPR007087Zinc finger, C2H2
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
SuperFamilySSF576671.36E-7260283No hitNo description
PfamPF139123.8E-10261285IPR007087Zinc finger, C2H2
SMARTSM003550.37261283IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827261288IPR007087Zinc finger, C2H2
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
SuperFamilySSF576671.36E-7325352No hitNo description
PfamPF139123.9E-13330353IPR007087Zinc finger, C2H2
SMARTSM003550.043330352IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12330352IPR007087Zinc finger, C2H2
PROSITE patternPS000280332352IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEQCYKDDCG SSLGFIVEKR KDIEKDQAED DEKEPKSISL REEEEEDNDD RANSIDLEGD  60
VEEEEEKKHM CSECGKQFMS GKALGGHKRI HVLENQNKSG ESEIDCSVCH KKFTSRKALY  120
GHMRFHPDRA WKGVLPPSPP HPLGNSSSST LSTDDHHVGE FTSSDHDDDD DGYDNIDAKD  180
QIDESDNIDA KDLMLLATTA EAVNLDVVET CDSHSAEDMK KKKRRLPEIE KVSSSSTHDH  240
HHQLGDVAAA AEEGGGAREK HVCVTCNKSF TSYQALGGHR ASHNKAKILE NHHARANREA  300
SLLGTEAMIT GLASAQASNT SLSRSNNGDH VCDICHKSFP TGQALGGHKR RHWTGPVSSE  360
AATADPTAPA AGSSHQVTET VQEVKKFEFD LNELPPNEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219224KKKKRR
2220224KKKRR
3220225KKKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623868.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2411940.0AC241194.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH124P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623868.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A0D3B3870.0A0A0D3B387_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AUP90.0A0A3P6AUP9_BRAOL; Uncharacterized protein
STRINGBo3g021160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.12e-69C2H2 family protein