PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623784.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 127aa    MW: 14449.2 Da    PI: 5.4646
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.2e-16993195
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    ffk l     ++sg +++p  f+++h +g k+++kt +l++  s ++Wev    + +    +lt+GWk+F  a++L+ gD v+Fk++g++ f  +v+
  XP_013623784.1  9 FFKPL--LPGFQSG-VTIPLAFFSKHiEG-KTNQKTWKLRSdASDQTWEVIQ--EDR----TLTRGWKDFTTAHDLQIGDLVIFKHEGDMVF--HVT 93
                    66666..6667776.9**********654.467789***997889*****99..444....4***********************9999998..766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-213100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-204104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.632698IPR003340B3 DNA binding domain
CDDcd100172.23E-16795No hitNo description
SMARTSM010193.3E-18998IPR003340B3 DNA binding domain
PfamPF023626.4E-111790IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MANPHEPHFF KPLLPGFQSG VTIPLAFFSK HIEGKTNQKT WKLRSDASDQ TWEVIQEDRT  60
LTRGWKDFTT AHDLQIGDLV IFKHEGDMVF HVTPFGPSCC EIQYTHPHII KEEADAGDAD  120
DNEISKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623784.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894641e-171AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601544.14e-92PREDICTED: B3 domain-containing protein REM9-like
SwissprotO817782e-44REM9_ARATH; B3 domain-containing protein REM9
TrEMBLA0A0D3B6X93e-91A0A0D3B6X9_BRAOL; Uncharacterized protein
TrEMBLA0A0D3DQY25e-91A0A0D3DQY2_BRAOL; Uncharacterized protein
STRINGBo3g039030.15e-92(Brassica oleracea)
STRINGBo8g071450.18e-92(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-46B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Wang S, et al.
    Chloroplast RNA-Binding Protein RBD1 Promotes Chilling Tolerance through 23S rRNA Processing in Arabidopsis.
    PLoS Genet., 2016. 12(5): p. e1006027
    [PMID:27138552]