PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623406.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 358aa    MW: 40809.4 Da    PI: 8.2659
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623406.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029113136123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C+ C+++F  ++ L  H r  H
  XP_013623406.1 113 YFCGVCDRRFYANEKLIAHFRQiH 136
                     78*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.6E-630113IPR029060PIN domain-like
PfamPF019363.3E-735266IPR021139NYN domain, limkain-b1-type
SuperFamilySSF576678.76E-5112138No hitNo description
PROSITE profilePS5015710.949113141IPR007087Zinc finger, C2H2
PROSITE patternPS000280115136IPR007087Zinc finger, C2H2
CDDcd061671.85E-10179265No hitNo description
Gene3DG3DSA:3.40.50.10101.6E-6198268IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MFSRFLHRIR SSKTPITSLN SIKPFTSLNP KPPTRVAVFW DLDNKPPASH PPHDAAVKLR  60
TAASSFGSVK LMVAYANRHA FSYVPAQVRE ERKDRKLLNQ LENTGLAKPA EPYFCGVCDR  120
RFYANEKLIA HFRQIHETEN QKRVRQIEAA KGHQRVRLVA KYSMKMEKYK RAARNVLTPK  180
EGYGLADELK RGGFWVKMVS DKPEAADRAL KEHMVDVMDR REAECLVLVS DDSGFAEVLW  240
EAKERCLRTV VIGDLSEGKL KRVADVAYSW KEVVMGKAKK EVEKVVGKWR DGDVLKKLEW  300
SYDPVLEKER GFCCGDWDYG FDSDGDDDEV ENGAEMGDGG DWWEMDDEDG AGSSRPCR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623406.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623406.10.0PREDICTED: uncharacterized protein LOC106329312
TrEMBLA0A0D3B8910.0A0A0D3B891_BRAOL; Uncharacterized protein
STRINGBo3g045630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-179C2H2 family protein