PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013623225.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 362aa MW: 41733.6 Da PI: 4.8939 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.3 | 1.4e-34 | 13 | 104 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye+++d++ ++++sws++++sf+v+++ ef++++Lpk+Fkh+nfaSF+RQLn+YgF+k + e+ weF+++ F +g+ +l+++ XP_013623225.1 13 FLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPKFFKHNNFASFIRQLNTYGFRKADPEQ---------WEFANDDFVRGQPHLMKN 98 9**************************************************************99988.........****************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_013623225.1 99 IHRRKP 104 ***985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 6.8E-35 | 9 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.0E-62 | 9 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 8.2E-38 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.6E-31 | 13 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-19 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-19 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-19 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF11414 | 3.0E-6 | 126 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MDESNHGGSL PPFLTKTYEM VDDSSSDSIV SWSQSNKSFI VWNPPEFSRD LLPKFFKHNN 60 FASFIRQLNT YGFRKADPEQ WEFANDDFVR GQPHLMKNIH RRKPVHSHSS PSLQPHPLTD 120 SERQRMNDQI ERLTKEKEVL LQELHKQEKE REMFQQQVKE LKDQLQHMEK RQKTMVSFVS 180 QVLEKPELAL NLSPCLLETN ERKRRFPRIG LEGSTSPSSQ ARELQVEQLE SSIAVWENLV 240 SEDSSESLGQ EKRSMMTLDV DESSTCPESP PLPCIQLSID TCPNCPTSPR TIDMNSEPDT 300 SKEPPPAAGV NDVFWQQLLT ENPGSTEQKE VQAERKDDKA EECWWDLRNV NTLTEQLGHL 360 TS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-23 | 9 | 102 | 25 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-23 | 9 | 102 | 25 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-23 | 9 | 102 | 25 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013623225.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ435241 | 0.0 | HQ435241.1 Brassica napus cultivar Deyou No.5 heat shock transcription factor A4a (HsfA4a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623224.1 | 0.0 | PREDICTED: heat stress transcription factor A-4a-like | ||||
Refseq | XP_013623225.1 | 0.0 | PREDICTED: heat stress transcription factor A-4a-like | ||||
Refseq | XP_013698830.1 | 0.0 | heat stress transcription factor A-4a | ||||
Refseq | XP_013698833.1 | 0.0 | heat stress transcription factor A-4a | ||||
Swissprot | O49403 | 0.0 | HFA4A_ARATH; Heat stress transcription factor A-4a | ||||
TrEMBL | A0A078F894 | 0.0 | A0A078F894_BRANA; BnaC03g62890D protein | ||||
TrEMBL | A0A0D3BKD6 | 0.0 | A0A0D3BKD6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6B7W0 | 0.0 | A0A3P6B7W0_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g157380.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 0.0 | heat shock transcription factor A4A |
Publications ? help Back to Top | |||
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