PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623152.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 282aa    MW: 32171.2 Da    PI: 4.7354
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623152.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.5e-1958111356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++  +q+++Le+ Fe ++++  e++++LA++lgL+ rqV vWFqNrRa++k
  XP_013623152.1  58 KKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLEPRQVAVWFQNRRARWK 111
                     45578899*********************************************9 PP
2HD-ZIP_I/II126.51.2e-4057148192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl  +qvk+LE++Fe e+kLeperK++la+eLgl+prqvavWFqnrRAR+ktkqlEkdy  Lk++yd+l+++ ++L++++++L  +++
  XP_013623152.1  57 EKKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLEPRQVAVWFQNRRARWKTKQLEKDYGLLKSQYDSLRHNFDSLRRDNDSLVLKIS 148
                     69************************************************************************************997776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-1942115IPR009057Homeodomain-like
PROSITE profilePS5007117.26553113IPR001356Homeobox domain
SMARTSM003891.7E-1656117IPR001356Homeobox domain
CDDcd000861.23E-1558114No hitNo description
PfamPF000465.2E-1658111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-1961120IPR009057Homeodomain-like
PRINTSPR000317.0E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000317.0E-693109IPR000047Helix-turn-helix motif
PfamPF021834.5E-16113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MKRLSSSDSM YGLISNSTDE QSFRGYGHNF QSMLDGYEDD STMMEEYSGN HHMGQSEKKR  60
RLRVDQVKAL EKNFELENKL EPERKTKLAQ ELGLEPRQVA VWFQNRRARW KTKQLEKDYG  120
LLKSQYDSLR HNFDSLRRDN DSLVLKISEL KAKINGEEDN NKVTAESDIS AVKEENVPSS  180
PPEFIEHSTG FDYRRSFTNL CDLLPNSTAV DGGSSDSCDS SAETSSENGR LTTPTVTGGN  240
LFQFVKTEQM EDHNDFLSGE EACCFFSDEQ PPSLHWYSAS DH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623152.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527321e-153AK352732.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623152.10.0PREDICTED: homeobox-leucine zipper protein ATHB-16-like
SwissprotQ940J11e-164ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A0D3BJN30.0A0A0D3BJN3_BRAOL; Uncharacterized protein
STRINGBo3g152870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-140homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]