PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013623089.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 842aa MW: 92574.6 Da PI: 6.0024 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.4 | 1e-17 | 26 | 84 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++p+ +r++L +++ +++ +q+kvWFqNrR ++k+ XP_013623089.1 26 KYVRYTAEQVEALERVYSECPKPTSLRRQQLIRECsflaNIEPKQIKVWFQNRRCRDKQ 84 56789***************************************************996 PP | |||||||
2 | bZIP_1 | 20 | 1.5e-06 | 78 | 123 | 18 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 rr+R + ++e +L+ ++L+a Nk L +e+++l+k+v+ l se+ XP_013623089.1 78 RRCRDKQRKEASRLQSVNQKLSAMNKLLMEENDRLQKQVSHLVSEN 123 9***************************************998887 PP | |||||||
3 | START | 155.9 | 3.2e-49 | 165 | 372 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+ ++g a+ra+g+v ++++ ve+l d++ W +++++ e+ sg g+++l+ XP_013623089.1 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQKCNGVAARACGLVSLEPMKIVEILKDRP-SWFRDCRSLEVFTMFPSGngGTIELI 258 68999*****************************************************9999999999.***************99999****** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++++a+++l+p Rdf+++Ry+ +l+ g++v++++S++ p+ +++++ae+lpSg+li+p+++g s +++v+h++ +g++++ +lr+l+ XP_013623089.1 259 YMQTYAPTTLAPaRDFWTLRYTTSLENGSFVVCERSLSGSGAGPNatsAAQFAKAEMLPSGYLIRPCDGGCSIIHIVDHINFEGWSVPDVLRPLY 353 **************************************999999889899********************************************* PP HHHHHHHHHHHHHHTXXXX CS START 186 ksglaegaktwvatlqrqc 204 +s+ + +++++ a+l++ + XP_013623089.1 354 ESSKVVAQRMTIAALRYVR 372 ***************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.273 | 21 | 85 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.12E-16 | 23 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.8E-14 | 23 | 89 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.97E-15 | 26 | 86 | No hit | No description |
Pfam | PF00046 | 3.3E-15 | 27 | 84 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-18 | 28 | 84 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 2.05E-6 | 78 | 117 | No hit | No description |
PROSITE profile | PS50848 | 25.829 | 155 | 383 | IPR002913 | START domain |
CDD | cd08875 | 1.25E-69 | 159 | 373 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 4.1E-18 | 163 | 355 | IPR023393 | START-like domain |
SMART | SM00234 | 1.1E-38 | 164 | 374 | IPR002913 | START domain |
Pfam | PF01852 | 1.0E-46 | 165 | 372 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.65E-32 | 165 | 374 | No hit | No description |
Pfam | PF08670 | 5.4E-47 | 694 | 841 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence Send to blast |
MAMTVAVANR HESGDNINRH LDSSGKYVRY TAEQVEALER VYSECPKPTS LRRQQLIREC 60 SFLANIEPKQ IKVWFQNRRC RDKQRKEASR LQSVNQKLSA MNKLLMEEND RLQKQVSHLV 120 SENGYMKQQL TLTTVGTDAS CDSVDPTPPH HPLTDANSPA GLIAIAEETL AEFLSKATGT 180 AVDWVQMPGM KPGPDSVGIF AISQKCNGVA ARACGLVSLE PMKIVEILKD RPSWFRDCRS 240 LEVFTMFPSG NGGTIELIYM QTYAPTTLAP ARDFWTLRYT TSLENGSFVV CERSLSGSGA 300 GPNATSAAQF AKAEMLPSGY LIRPCDGGCS IIHIVDHINF EGWSVPDVLR PLYESSKVVA 360 QRMTIAALRY VRQVAHETNG EVVYGLGRQP AVLRTFSQRL SRGFNDAVNG FNDDGWSIMH 420 CNGAEDITVA VNSTKHLNSF SDPLSFLGGV LCAKASMLLH NVCPAVLIRF LREHRSEWAD 480 FNVDAYSAAT LKAGAFAYSR MRPTTFTGSQ IIMPLGNTIE KEEMLEVVRL EGHSLVPEDS 540 FLTRDVHLLQ ICTGIDEDAL GACSELVFAP VNEMFPDDAP LVPSGFRVIP VDAKTVGDAQ 600 DLLTANHQTL DLTSSQDVGS TPETGSNPST QCILTIAFQF PFENNLQENV ANMACQYVRS 660 VISSVQRVAV ALSPSVLIPI PGSKLSPGSP EAVSLAIWIC HSYKQHFGSD LLRTDSLGGD 720 ALLRQLWDHQ DAILCCSLKP QPVFMFANQA GLDMLETTLV ALQGITLEKI FDESGRKALC 780 PDFAKLMQQG FACLPSGMCV STIGRHVSYE QAVSWKVFSD CEVNNNNRIH CLAFLFANWS 840 FL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the earliest stages and throughout LSM initiation and development. In embryo development, expressed at the heart stage until the 'walking stick' stage in the adaxial portion of the cotyledon primordia, the shoot apical meristem (SAM) and the vascular precursor cells of the hypocotyl and root. In developing flowers, expressed first at stage 1 in the center of L3 layer and then expands to the center of L2 and L1 layers. Expressed in the center of flower meristem through stages 4 and 5. At stage 6, expressed in the adaxial side of the carpel primordia and then on the adaxial carpel face. {ECO:0000269|PubMed:11169198}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the interfascicular regions of stem and vascular bundles of young roots and leaves. {ECO:0000269|PubMed:10559440}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013623089.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623089.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein REVOLUTA-like isoform X1 | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | A0A3P6BCF0 | 0.0 | A0A3P6BCF0_BRAOL; Uncharacterized protein | ||||
STRING | Bra038295.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4779 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |