PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623034.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 630aa    MW: 68204.3 Da    PI: 6.4248
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623034.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.51e-31236293260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK vkgse+prsYY+Ct ++C+vkkkvers+ +++++ei+Y+g Hnh+k
  XP_013623034.1 236 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSR-EGHITEIIYKGAHNHSK 293
                     8****************************************.***************85 PP
2WRKY102.13.2e-32436493259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+H+he
  XP_013623034.1 436 DDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHDHE 493
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-28233294IPR003657WRKY domain
SuperFamilySSF1182904.32E-25234294IPR003657WRKY domain
SMARTSM007741.6E-34235293IPR003657WRKY domain
PfamPF031065.2E-24236291IPR003657WRKY domain
PROSITE profilePS5081123.25236294IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-35420495IPR003657WRKY domain
SuperFamilySSF1182906.54E-28427495IPR003657WRKY domain
PROSITE profilePS5081137.149430495IPR003657WRKY domain
SMARTSM007744.2E-35435494IPR003657WRKY domain
PfamPF031063.1E-24436492IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MSGFEEHVAV MGEWVPCNPS SKRVLKRELS LNHGQVTSNN NKDSSQTNNI SGGGLRERIA  60
ARAGFNTPRL NTENIRSNTD SSSLRSPCLT ISSPGLSPAT LLESPVFLSN PLAQPSPTTG  120
KFSFLPGVHS NGLSSPDASE KDKDEFFDVI GASFTFHPVS TSSSSFFQNA TEMTLVDNSN  180
YNNSSSHQKL GSEQSGLKRK TSDATTITND HQEEEEGEGE EQRGCDSMVG GGAPAEDGYN  240
WRKYGQKLVK GSEYPRSYYK CTNPNCQVKK KVERSREGHI TEIIYKGAHN HSKPPPNRRS  300
GMQLDGTEQP EHQQQQRDNA GTWVSCNNTQ QQVGSNENNG EEGGQYESGD GNGNGGVIMV  360
DASSTFSNDE DEDDRGTHGS ASLGYDGGGG GGGEGDESES KRRKLEAYAI EMSGATRAIR  420
EPRVVVQTTS DVDIFDDGYR WRKYGQKVVK GNPNPRSYYK CTAPGCTVRK HVERASHDLK  480
SVITTYEGKH DHEVPAARNS SHGGGGGNGN SGVSTAQTQH YQEPPRGRFE RQLTANNQSQ  540
FGRPFSFQPH LGPPSGFAFG LGQTGLSNLS IPGLAFGQGK LPSLPYQYLS QPGGMSEAMM  600
QRGMEPKVEP GSETGQSVYD QMMSRLPQTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-35236496878Probable WRKY transcription factor 4
2lex_A2e-35236496878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623034.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931670.0KM593167.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY141) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623034.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_013623035.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A0D3B3810.0A0A0D3B381_BRAOL; Uncharacterized protein
STRINGBo3g021100.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]