PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013623012.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 334aa    MW: 36886.3 Da    PI: 9.7426
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013623012.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.33.3e-13256306555
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                     +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ +  e+ ++
  XP_013623012.1 256 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKVNQELQRKQAEMMEM 306
                     69*************************************998766665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-11252316IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.53254305IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.26E-10256305No hitNo description
CDDcd147071.07E-24256308No hitNo description
Gene3DG3DSA:1.20.5.1704.2E-13256305No hitNo description
PfamPF001705.1E-11256307IPR004827Basic-leucine zipper domain
PROSITE patternPS000360259274IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MKPTDTTNPL ARQSSVYSLT FDELQSTFGG PGKDLGSMNM DELLKSIWTA EEAQAMTSSA  60
VAQPNGVNLQ RQGSLTLPRT ISQKTVDEVW KFLIAKDGDM GGSSNGESNA PPGRQQTLGE  120
MTLEDFMFRA GVVREDNNLS FNGGNDSMIL NQPQQQFQQQ SHPHHQHQRL PQTIFPKQAN  180
VEFAASVGMV NKGFTGAVNN SMNNDNGLAS FSGEGVKIAA TSPGTSSAEN NSLSPVPCVL  240
NGGRRSSTGV EKVIERRQRR MIKNRESAAR SRARKQAYTL ELEAEIEKLK KVNQELQRKQ  300
AEMMEMQKNE VNEPSKQPWG SKRQCLRRTL TGPW
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, flowers and immatures siliques. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16463099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013623012.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623012.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X2
SwissprotQ9M7Q21e-167AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBLA0A0D3BC500.0A0A0D3BC50_BRAOL; Uncharacterized protein
STRINGBo3g073080.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19290.11e-149ABRE binding factor 4
Publications ? help Back to Top
  1. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  2. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]
  3. Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA
    Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance.
    Plant Mol. Biol., 2018. 98(1-2): p. 137-152
    [PMID:30143991]