PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013623011.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 351aa MW: 38616.2 Da PI: 9.7427

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013623011.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.2	3.6e-13	273	323	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ + e+ ++ XP_013623011.1 273 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKVNQELQRKQAEMMEM 323 69*************************************998766665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.0E-11	269	333	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.53	271	322	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.5E-11	273	324	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.5E-13	273	322	No hit	No description
SuperFamily	SSF57959	6.75E-10	273	322	No hit	No description
CDD	cd14707	4.30E-25	273	325	No hit	No description
PROSITE pattern	PS00036	0	276	291	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MGTHINFNNL GSGGSNQMKP TDTTNPLARQ SSVYSLTFDE LQSTFGGPGK DLGSMNMDEL 60 LKSIWTAEEA QAMTSSAVAQ PNGVNLQRQG SLTLPRTISQ KTVDEVWKFL IAKDGDMGGS 120 SNGESNAPPG RQQTLGEMTL EDFMFRAGVV REDNNLSFNG GNDSMILNQP QQQFQQQSHP 180 HHQHQRLPQT IFPKQANVEF AASVGMVNKG FTGAVNNSMN NDNGLASFSG EGVKIAATSP 240 GTSSAENNSL SPVPCVLNGG RRSSTGVEKV IERRQRRMIK NRESAARSRA RKQAYTLELE 300 AEIEKLKKVN QELQRKQAEM MEMQKNEVNE PSKQPWGSKR QCLRRTLTGP W

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MGTHINFNNL GSGGSNQMKP TDTTNPLARQ SSVYSLTFDE LQSTFGGPGK DLGSMNMDEL  60
LKSIWTAEEA QAMTSSAVAQ PNGVNLQRQG SLTLPRTISQ KTVDEVWKFL IAKDGDMGGS  120
SNGESNAPPG RQQTLGEMTL EDFMFRAGVV REDNNLSFNG GNDSMILNQP QQQFQQQSHP  180
HHQHQRLPQT IFPKQANVEF AASVGMVNKG FTGAVNNSMN NDNGLASFSG EGVKIAATSP  240
GTSSAENNSL SPVPCVLNGG RRSSTGVEKV IERRQRRMIK NRESAARSRA RKQAYTLELE  300
AEIEKLKKVN QELQRKQAEM MEMQKNEVNE PSKQPWGSKR QCLRRTLTGP W

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, flowers and immatures siliques. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679}.

Functional Description ? help Back to Top
Source	Description
UniProt	Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013623011.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013623011.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X1
Swissprot	Q9M7Q2	1e-175	AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBL	A0A0D3BC50	0.0	A0A0D3BC50_BRAOL; Uncharacterized protein
STRING	Bo3g073080.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.1	1e-157	ABRE binding factor 4

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance. Plant Mol. Biol., 2018. 98(1-2): p. 137-152 [PMID:30143991]